Hb_000086_420

Information

Type -
Description -
Location Contig86: 333769-343389
Sequence    

Annotation

kegg
ID rcu:RCOM_0543280
description phosphatidylcholine acyltransferase, putative (EC:2.3.1.158)
nr
ID XP_012085264.1
description PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
swissprot
ID Q4VCM1
description Phospholipid--sterol O-acyltransferase OS=Arabidopsis thaliana GN=PSAT PE=2 SV=2
trembl
ID A0A067JRH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17650 PE=4 SV=1
Gene Ontology
ID GO:0004607
description phospholipid--sterol o-acyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60735: 333646-339207 , PASA_asmbl_60736: 338335-338517 , PASA_asmbl_60737: 339224-343196 , PASA_asmbl_60738: 340621-341081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_420 0.0 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
2 Hb_000327_140 0.0533758194 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
3 Hb_000029_060 0.061827309 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
4 Hb_012239_020 0.0636182839 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
5 Hb_004994_240 0.0656587232 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
6 Hb_000292_100 0.0710810201 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
7 Hb_000738_020 0.0727473011 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000120_030 0.073004602 - - PREDICTED: uncharacterized protein LOC105630385 isoform X1 [Jatropha curcas]
9 Hb_002492_010 0.0751752456 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
10 Hb_000365_230 0.0755072166 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
11 Hb_000521_330 0.0756374839 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010775_030 0.0758815995 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
13 Hb_001300_010 0.076046756 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
14 Hb_000454_130 0.0783146759 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
15 Hb_006588_060 0.0792764548 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
16 Hb_010287_020 0.0809962324 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
17 Hb_002232_480 0.08155797 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
18 Hb_000484_130 0.0818096286 - - splicing factor, putative [Ricinus communis]
19 Hb_002014_010 0.0821121457 - - Uncharacterized protein isoform 1 [Theobroma cacao]
20 Hb_000699_150 0.0827890428 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_420 Hb_000086_420 Hb_000327_140 Hb_000327_140 Hb_000086_420--Hb_000327_140 Hb_000029_060 Hb_000029_060 Hb_000086_420--Hb_000029_060 Hb_012239_020 Hb_012239_020 Hb_000086_420--Hb_012239_020 Hb_004994_240 Hb_004994_240 Hb_000086_420--Hb_004994_240 Hb_000292_100 Hb_000292_100 Hb_000086_420--Hb_000292_100 Hb_000738_020 Hb_000738_020 Hb_000086_420--Hb_000738_020 Hb_000327_140--Hb_000029_060 Hb_000327_140--Hb_012239_020 Hb_000327_140--Hb_004994_240 Hb_000120_030 Hb_000120_030 Hb_000327_140--Hb_000120_030 Hb_002232_480 Hb_002232_480 Hb_000327_140--Hb_002232_480 Hb_003849_110 Hb_003849_110 Hb_000029_060--Hb_003849_110 Hb_001716_020 Hb_001716_020 Hb_000029_060--Hb_001716_020 Hb_004916_010 Hb_004916_010 Hb_000029_060--Hb_004916_010 Hb_002110_080 Hb_002110_080 Hb_000029_060--Hb_002110_080 Hb_012239_020--Hb_000738_020 Hb_000484_130 Hb_000484_130 Hb_012239_020--Hb_000484_130 Hb_012239_020--Hb_004994_240 Hb_001300_010 Hb_001300_010 Hb_012239_020--Hb_001300_010 Hb_004994_240--Hb_001300_010 Hb_004994_240--Hb_002232_480 Hb_002492_010 Hb_002492_010 Hb_004994_240--Hb_002492_010 Hb_003398_080 Hb_003398_080 Hb_004994_240--Hb_003398_080 Hb_000856_040 Hb_000856_040 Hb_004994_240--Hb_000856_040 Hb_000347_250 Hb_000347_250 Hb_000292_100--Hb_000347_250 Hb_007254_020 Hb_007254_020 Hb_000292_100--Hb_007254_020 Hb_000230_400 Hb_000230_400 Hb_000292_100--Hb_000230_400 Hb_002435_100 Hb_002435_100 Hb_000292_100--Hb_002435_100 Hb_000292_100--Hb_000029_060 Hb_062226_130 Hb_062226_130 Hb_000738_020--Hb_062226_130 Hb_002073_200 Hb_002073_200 Hb_000738_020--Hb_002073_200 Hb_005162_090 Hb_005162_090 Hb_000738_020--Hb_005162_090 Hb_000738_020--Hb_003849_110 Hb_000869_080 Hb_000869_080 Hb_000738_020--Hb_000869_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.93311 6.89227 5.99169 4.54901 2.46107 3.3816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.61457 4.92798 3.22467 4.25793 4.2

CAGE analysis