Hb_007254_020

Information

Type -
Description -
Location Contig7254: 19574-23528
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21170g
description POPTRDRAFT_761021; PHD finger family protein
nr
ID XP_012066056.1
description PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3M4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25213 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55833: 19496-20227 , PASA_asmbl_55834: 20245-21862 , PASA_asmbl_55835: 23319-23630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007254_020 0.0 - - PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]
2 Hb_002435_100 0.0627133708 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Jatropha curcas]
3 Hb_000292_100 0.0645512597 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
4 Hb_000373_050 0.0719691939 - - PREDICTED: protein WHI3 [Jatropha curcas]
5 Hb_000230_460 0.0794881018 - - Speckle-type POZ protein, putative [Ricinus communis]
6 Hb_000176_020 0.0795820535 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
7 Hb_171900_090 0.0798300252 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001720_040 0.0808559576 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000738_020 0.081488897 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000173_310 0.0820067278 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
11 Hb_001623_270 0.0820235046 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
12 Hb_002413_010 0.0827360358 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_003647_140 0.0838881966 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
14 Hb_000230_400 0.0845506905 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_004870_050 0.0857042149 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
16 Hb_004837_180 0.0859239357 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
17 Hb_011930_020 0.0867723908 - - PREDICTED: uncharacterized protein LOC105649787 isoform X1 [Jatropha curcas]
18 Hb_002217_110 0.0876333416 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
19 Hb_000282_090 0.087664555 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
20 Hb_000340_400 0.0878152426 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007254_020 Hb_007254_020 Hb_002435_100 Hb_002435_100 Hb_007254_020--Hb_002435_100 Hb_000292_100 Hb_000292_100 Hb_007254_020--Hb_000292_100 Hb_000373_050 Hb_000373_050 Hb_007254_020--Hb_000373_050 Hb_000230_460 Hb_000230_460 Hb_007254_020--Hb_000230_460 Hb_000176_020 Hb_000176_020 Hb_007254_020--Hb_000176_020 Hb_171900_090 Hb_171900_090 Hb_007254_020--Hb_171900_090 Hb_002435_100--Hb_000292_100 Hb_002435_100--Hb_000230_460 Hb_000035_090 Hb_000035_090 Hb_002435_100--Hb_000035_090 Hb_000230_400 Hb_000230_400 Hb_002435_100--Hb_000230_400 Hb_000282_090 Hb_000282_090 Hb_002435_100--Hb_000282_090 Hb_000347_250 Hb_000347_250 Hb_000292_100--Hb_000347_250 Hb_000292_100--Hb_000230_400 Hb_000029_060 Hb_000029_060 Hb_000292_100--Hb_000029_060 Hb_000086_420 Hb_000086_420 Hb_000292_100--Hb_000086_420 Hb_003647_140 Hb_003647_140 Hb_000373_050--Hb_003647_140 Hb_000976_120 Hb_000976_120 Hb_000373_050--Hb_000976_120 Hb_014834_150 Hb_014834_150 Hb_000373_050--Hb_014834_150 Hb_000270_310 Hb_000270_310 Hb_000373_050--Hb_000270_310 Hb_001863_380 Hb_001863_380 Hb_000373_050--Hb_001863_380 Hb_178968_060 Hb_178968_060 Hb_000230_460--Hb_178968_060 Hb_000230_460--Hb_000176_020 Hb_000137_010 Hb_000137_010 Hb_000230_460--Hb_000137_010 Hb_000160_140 Hb_000160_140 Hb_000230_460--Hb_000160_140 Hb_000176_020--Hb_171900_090 Hb_001623_270 Hb_001623_270 Hb_000176_020--Hb_001623_270 Hb_001025_090 Hb_001025_090 Hb_000176_020--Hb_001025_090 Hb_000699_150 Hb_000699_150 Hb_000176_020--Hb_000699_150 Hb_000789_320 Hb_000789_320 Hb_000176_020--Hb_000789_320 Hb_171900_090--Hb_000789_320 Hb_164390_010 Hb_164390_010 Hb_171900_090--Hb_164390_010 Hb_183433_010 Hb_183433_010 Hb_171900_090--Hb_183433_010 Hb_002272_050 Hb_002272_050 Hb_171900_090--Hb_002272_050 Hb_171900_090--Hb_001025_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.45612 11.8444 13.7572 8.10326 7.5667 6.28782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.71516 11.6869 5.7287 5.91683 9.17623

CAGE analysis