Hb_000292_100

Information

Type transcription factor
Description TF Family: bZIP
Location Contig292: 215989-229867
Sequence    

Annotation

kegg
ID rcu:RCOM_1316780
description DNA-binding protein EMBP-1, putative
nr
ID XP_012080771.1
description PREDICTED: transcription factor HBP-1a [Jatropha curcas]
swissprot
ID P23922
description Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1
trembl
ID A0A067KFY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15542 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor hbp-1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000292_100 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
2 Hb_000347_250 0.0621341384 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
3 Hb_007254_020 0.0645512597 - - PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]
4 Hb_000230_400 0.0661973263 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_002435_100 0.067638506 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Jatropha curcas]
6 Hb_000029_060 0.0680224481 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
7 Hb_000086_420 0.0710810201 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
8 Hb_000365_230 0.0712593213 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
9 Hb_000699_150 0.0760201135 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
10 Hb_062226_130 0.0777434615 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
11 Hb_000738_020 0.0779007442 - - zinc finger protein, putative [Ricinus communis]
12 Hb_001377_190 0.0795114611 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
13 Hb_001259_050 0.0801241527 - - calcium lipid binding protein, putative [Ricinus communis]
14 Hb_010068_080 0.0805757275 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
15 Hb_000363_310 0.0806589685 - - DNA topoisomerase type I, putative [Ricinus communis]
16 Hb_000749_010 0.0811090513 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
17 Hb_003428_010 0.0815397738 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
18 Hb_183433_010 0.0823727941 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
19 Hb_001623_270 0.0827158895 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
20 Hb_000230_460 0.0829295465 - - Speckle-type POZ protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000292_100 Hb_000292_100 Hb_000347_250 Hb_000347_250 Hb_000292_100--Hb_000347_250 Hb_007254_020 Hb_007254_020 Hb_000292_100--Hb_007254_020 Hb_000230_400 Hb_000230_400 Hb_000292_100--Hb_000230_400 Hb_002435_100 Hb_002435_100 Hb_000292_100--Hb_002435_100 Hb_000029_060 Hb_000029_060 Hb_000292_100--Hb_000029_060 Hb_000086_420 Hb_000086_420 Hb_000292_100--Hb_000086_420 Hb_007472_070 Hb_007472_070 Hb_000347_250--Hb_007472_070 Hb_062226_130 Hb_062226_130 Hb_000347_250--Hb_062226_130 Hb_012022_040 Hb_012022_040 Hb_000347_250--Hb_012022_040 Hb_002849_130 Hb_002849_130 Hb_000347_250--Hb_002849_130 Hb_001259_050 Hb_001259_050 Hb_000347_250--Hb_001259_050 Hb_007254_020--Hb_002435_100 Hb_000373_050 Hb_000373_050 Hb_007254_020--Hb_000373_050 Hb_000230_460 Hb_000230_460 Hb_007254_020--Hb_000230_460 Hb_000176_020 Hb_000176_020 Hb_007254_020--Hb_000176_020 Hb_171900_090 Hb_171900_090 Hb_007254_020--Hb_171900_090 Hb_005588_080 Hb_005588_080 Hb_000230_400--Hb_005588_080 Hb_000375_390 Hb_000375_390 Hb_000230_400--Hb_000375_390 Hb_001623_270 Hb_001623_270 Hb_000230_400--Hb_001623_270 Hb_000059_380 Hb_000059_380 Hb_000230_400--Hb_000059_380 Hb_000035_090 Hb_000035_090 Hb_000230_400--Hb_000035_090 Hb_002435_100--Hb_000230_460 Hb_002435_100--Hb_000035_090 Hb_002435_100--Hb_000230_400 Hb_000282_090 Hb_000282_090 Hb_002435_100--Hb_000282_090 Hb_003849_110 Hb_003849_110 Hb_000029_060--Hb_003849_110 Hb_001716_020 Hb_001716_020 Hb_000029_060--Hb_001716_020 Hb_004916_010 Hb_004916_010 Hb_000029_060--Hb_004916_010 Hb_002110_080 Hb_002110_080 Hb_000029_060--Hb_002110_080 Hb_000029_060--Hb_000086_420 Hb_000327_140 Hb_000327_140 Hb_000029_060--Hb_000327_140 Hb_000086_420--Hb_000327_140 Hb_012239_020 Hb_012239_020 Hb_000086_420--Hb_012239_020 Hb_004994_240 Hb_004994_240 Hb_000086_420--Hb_004994_240 Hb_000738_020 Hb_000738_020 Hb_000086_420--Hb_000738_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.92147 13.8307 13.1382 10.9893 7.4301 6.61057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.61437 13.7739 7.32303 8.7131 13.5045

CAGE analysis