Hb_000230_460

Information

Type -
Description -
Location Contig230: 418931-423041
Sequence    

Annotation

kegg
ID rcu:RCOM_0678210
description Speckle-type POZ protein, putative
nr
ID XP_002516797.1
description Speckle-type POZ protein, putative [Ricinus communis]
swissprot
ID Q9M8J9
description BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=1
trembl
ID B9RSS8
description Speckle-type POZ protein, putative OS=Ricinus communis GN=RCOM_0678210 PE=4 SV=1
Gene Ontology
ID GO:0005515
description btb poz and math domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24054: 419130-419256 , PASA_asmbl_24055: 419267-423180 , PASA_asmbl_24056: 421478-421764 , PASA_asmbl_24057: 421849-422258
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_460 0.0 - - Speckle-type POZ protein, putative [Ricinus communis]
2 Hb_178968_060 0.0631502841 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
3 Hb_002435_100 0.0690887943 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Jatropha curcas]
4 Hb_000176_020 0.0725363621 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
5 Hb_000137_010 0.0778991534 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
6 Hb_007254_020 0.0794881018 - - PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]
7 Hb_000160_140 0.0795328723 - - PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]
8 Hb_000680_120 0.0800133686 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
9 Hb_001221_440 0.0803518115 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
10 Hb_001635_110 0.081696319 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
11 Hb_002110_160 0.0825134239 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
12 Hb_000537_100 0.0826793239 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
13 Hb_000292_100 0.0829295465 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
14 Hb_010287_020 0.0842943326 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
15 Hb_002572_020 0.0842989351 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
16 Hb_000723_030 0.0860169918 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
17 Hb_002203_030 0.0862717288 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
18 Hb_002413_010 0.0879395524 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_000699_150 0.0879455113 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
20 Hb_000035_090 0.088030246 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000230_460 Hb_000230_460 Hb_178968_060 Hb_178968_060 Hb_000230_460--Hb_178968_060 Hb_002435_100 Hb_002435_100 Hb_000230_460--Hb_002435_100 Hb_000176_020 Hb_000176_020 Hb_000230_460--Hb_000176_020 Hb_000137_010 Hb_000137_010 Hb_000230_460--Hb_000137_010 Hb_007254_020 Hb_007254_020 Hb_000230_460--Hb_007254_020 Hb_000160_140 Hb_000160_140 Hb_000230_460--Hb_000160_140 Hb_001635_110 Hb_001635_110 Hb_178968_060--Hb_001635_110 Hb_001300_280 Hb_001300_280 Hb_178968_060--Hb_001300_280 Hb_003498_100 Hb_003498_100 Hb_178968_060--Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_178968_060--Hb_000120_890 Hb_001221_440 Hb_001221_440 Hb_178968_060--Hb_001221_440 Hb_002435_100--Hb_007254_020 Hb_000292_100 Hb_000292_100 Hb_002435_100--Hb_000292_100 Hb_000035_090 Hb_000035_090 Hb_002435_100--Hb_000035_090 Hb_000230_400 Hb_000230_400 Hb_002435_100--Hb_000230_400 Hb_000282_090 Hb_000282_090 Hb_002435_100--Hb_000282_090 Hb_171900_090 Hb_171900_090 Hb_000176_020--Hb_171900_090 Hb_001623_270 Hb_001623_270 Hb_000176_020--Hb_001623_270 Hb_001025_090 Hb_001025_090 Hb_000176_020--Hb_001025_090 Hb_000699_150 Hb_000699_150 Hb_000176_020--Hb_000699_150 Hb_000789_320 Hb_000789_320 Hb_000176_020--Hb_000789_320 Hb_000680_120 Hb_000680_120 Hb_000137_010--Hb_000680_120 Hb_000956_040 Hb_000956_040 Hb_000137_010--Hb_000956_040 Hb_000788_030 Hb_000788_030 Hb_000137_010--Hb_000788_030 Hb_005305_100 Hb_005305_100 Hb_000137_010--Hb_005305_100 Hb_004774_090 Hb_004774_090 Hb_000137_010--Hb_004774_090 Hb_007254_020--Hb_000292_100 Hb_000373_050 Hb_000373_050 Hb_007254_020--Hb_000373_050 Hb_007254_020--Hb_000176_020 Hb_007254_020--Hb_171900_090 Hb_004225_060 Hb_004225_060 Hb_000160_140--Hb_004225_060 Hb_000723_030 Hb_000723_030 Hb_000160_140--Hb_000723_030 Hb_002203_030 Hb_002203_030 Hb_000160_140--Hb_002203_030 Hb_010287_020 Hb_010287_020 Hb_000160_140--Hb_010287_020 Hb_000160_140--Hb_000137_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.03866 13.6845 17.6432 11.3991 5.76029 5.14253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.17189 10.9261 5.21529 7.49862 10.9145

CAGE analysis