Hb_000788_030

Information

Type -
Description -
Location Contig788: 31515-43233
Sequence    

Annotation

kegg
ID egr:104420026
description dynamin-2A-like
nr
ID XP_012066732.1
description PREDICTED: dynamin-2A [Jatropha curcas]
swissprot
ID Q9LQ55
description Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2
trembl
ID A0A067LDB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00287 PE=3 SV=1
Gene Ontology
ID GO:0003924
description dynamin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58167: 31591-43202 , PASA_asmbl_58168: 39253-39635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000788_030 0.0 - - PREDICTED: dynamin-2A [Jatropha curcas]
2 Hb_001703_040 0.0599595867 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
3 Hb_004324_360 0.0614124835 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
4 Hb_000476_060 0.0642145579 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
5 Hb_087313_010 0.0676814434 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002684_020 0.0722668568 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
7 Hb_006846_170 0.0736253778 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
8 Hb_000748_090 0.0761594655 - - glucose inhibited division protein A, putative [Ricinus communis]
9 Hb_002631_240 0.0769616419 - - JHL17M24.3 [Jatropha curcas]
10 Hb_004774_090 0.0772976412 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
11 Hb_000975_210 0.0773899539 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
12 Hb_004705_160 0.0776994728 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
13 Hb_000035_090 0.0778909643 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
14 Hb_001504_010 0.0780217477 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
15 Hb_000137_010 0.0781574243 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
16 Hb_021596_020 0.0807301814 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
17 Hb_012438_030 0.0814860623 - - PREDICTED: protein sym-1 [Jatropha curcas]
18 Hb_000069_610 0.0816089219 - - PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Jatropha curcas]
19 Hb_003098_070 0.0829709747 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
20 Hb_000815_300 0.0844580975 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000788_030 Hb_000788_030 Hb_001703_040 Hb_001703_040 Hb_000788_030--Hb_001703_040 Hb_004324_360 Hb_004324_360 Hb_000788_030--Hb_004324_360 Hb_000476_060 Hb_000476_060 Hb_000788_030--Hb_000476_060 Hb_087313_010 Hb_087313_010 Hb_000788_030--Hb_087313_010 Hb_002684_020 Hb_002684_020 Hb_000788_030--Hb_002684_020 Hb_006846_170 Hb_006846_170 Hb_000788_030--Hb_006846_170 Hb_012438_030 Hb_012438_030 Hb_001703_040--Hb_012438_030 Hb_002631_240 Hb_002631_240 Hb_001703_040--Hb_002631_240 Hb_001703_040--Hb_087313_010 Hb_001504_010 Hb_001504_010 Hb_001703_040--Hb_001504_010 Hb_000120_890 Hb_000120_890 Hb_001703_040--Hb_000120_890 Hb_004324_360--Hb_002684_020 Hb_000975_210 Hb_000975_210 Hb_004324_360--Hb_000975_210 Hb_001488_020 Hb_001488_020 Hb_004324_360--Hb_001488_020 Hb_004324_360--Hb_000476_060 Hb_033312_040 Hb_033312_040 Hb_004324_360--Hb_033312_040 Hb_003098_070 Hb_003098_070 Hb_000476_060--Hb_003098_070 Hb_089839_010 Hb_089839_010 Hb_000476_060--Hb_089839_010 Hb_001635_110 Hb_001635_110 Hb_000476_060--Hb_001635_110 Hb_000476_060--Hb_000120_890 Hb_087313_010--Hb_012438_030 Hb_002218_020 Hb_002218_020 Hb_087313_010--Hb_002218_020 Hb_102948_010 Hb_102948_010 Hb_087313_010--Hb_102948_010 Hb_087313_010--Hb_004324_360 Hb_006970_020 Hb_006970_020 Hb_002684_020--Hb_006970_020 Hb_021596_020 Hb_021596_020 Hb_002684_020--Hb_021596_020 Hb_000815_300 Hb_000815_300 Hb_002684_020--Hb_000815_300 Hb_002684_020--Hb_012438_030 Hb_002249_020 Hb_002249_020 Hb_006846_170--Hb_002249_020 Hb_003228_100 Hb_003228_100 Hb_006846_170--Hb_003228_100 Hb_006846_170--Hb_000975_210 Hb_088584_010 Hb_088584_010 Hb_006846_170--Hb_088584_010 Hb_023344_140 Hb_023344_140 Hb_006846_170--Hb_023344_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.22606 13.6225 22.2098 15.3463 7.11289 6.18469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.06814 8.42757 8.97667 8.89866 19.379

CAGE analysis