Hb_006970_020

Information

Type -
Description -
Location Contig6970: 20906-33917
Sequence    

Annotation

kegg
ID rcu:RCOM_1576900
description Type II DNA topoisomerase VI subunit B, putative (EC:5.99.1.3)
nr
ID XP_012092788.1
description PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
swissprot
ID Q9C5V6
description DNA topoisomerase 6 subunit B OS=Arabidopsis thaliana GN=TOP6B PE=1 SV=1
trembl
ID B9RI75
description DNA topoisomerase 6 subunit B OS=Ricinus communis GN=TOP6B PE=3 SV=1
Gene Ontology
ID GO:0005634
description dna topoisomerase 6 subunit b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54637: 21508-23897 , PASA_asmbl_54638: 23911-27941 , PASA_asmbl_54639: 25641-26508 , PASA_asmbl_54640: 29022-33738 , PASA_asmbl_54642: 32121-32303
cDNA
(Sanger)
(ID:Location)		 002_H16.ab1: 29051-32531 , 002_N14.ab1: 29053-32504 , 009_L18.ab1: 29053-32509 , 011_P07.ab1: 29051-32529 , 013_J06.ab1: 29051-32515 , 022_F17.ab1: 29051-32373 , 036_I24.ab1: 29052-32508

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006970_020 0.0 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
2 Hb_000815_300 0.0528012064 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
3 Hb_011377_040 0.0632750383 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
4 Hb_002684_020 0.0650207447 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
5 Hb_000078_140 0.0660578456 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
6 Hb_000862_100 0.0664374748 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
7 Hb_015884_020 0.0675830665 - - PREDICTED: protein PIR [Jatropha curcas]
8 Hb_001301_270 0.0677749147 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
9 Hb_002552_040 0.0691095994 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
10 Hb_007545_010 0.0712178993 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
11 Hb_001141_240 0.071979539 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
12 Hb_074197_040 0.0721774626 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
13 Hb_000139_080 0.0786806507 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
14 Hb_004324_360 0.0790871748 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
15 Hb_000406_210 0.0793299001 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
16 Hb_106890_010 0.0797118603 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
17 Hb_004957_030 0.0801652437 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
18 Hb_032202_220 0.0805710956 - - ring finger protein, putative [Ricinus communis]
19 Hb_019654_020 0.0820621034 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
20 Hb_000270_190 0.0821853534 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006970_020 Hb_006970_020 Hb_000815_300 Hb_000815_300 Hb_006970_020--Hb_000815_300 Hb_011377_040 Hb_011377_040 Hb_006970_020--Hb_011377_040 Hb_002684_020 Hb_002684_020 Hb_006970_020--Hb_002684_020 Hb_000078_140 Hb_000078_140 Hb_006970_020--Hb_000078_140 Hb_000862_100 Hb_000862_100 Hb_006970_020--Hb_000862_100 Hb_015884_020 Hb_015884_020 Hb_006970_020--Hb_015884_020 Hb_002552_040 Hb_002552_040 Hb_000815_300--Hb_002552_040 Hb_000406_210 Hb_000406_210 Hb_000815_300--Hb_000406_210 Hb_000815_300--Hb_000078_140 Hb_001141_240 Hb_001141_240 Hb_000815_300--Hb_001141_240 Hb_074197_040 Hb_074197_040 Hb_000815_300--Hb_074197_040 Hb_011377_040--Hb_074197_040 Hb_012330_010 Hb_012330_010 Hb_011377_040--Hb_012330_010 Hb_001301_270 Hb_001301_270 Hb_011377_040--Hb_001301_270 Hb_011377_040--Hb_000078_140 Hb_000046_540 Hb_000046_540 Hb_011377_040--Hb_000046_540 Hb_004324_360 Hb_004324_360 Hb_002684_020--Hb_004324_360 Hb_021596_020 Hb_021596_020 Hb_002684_020--Hb_021596_020 Hb_000788_030 Hb_000788_030 Hb_002684_020--Hb_000788_030 Hb_002684_020--Hb_000815_300 Hb_012438_030 Hb_012438_030 Hb_002684_020--Hb_012438_030 Hb_000139_080 Hb_000139_080 Hb_000078_140--Hb_000139_080 Hb_079526_040 Hb_079526_040 Hb_000078_140--Hb_079526_040 Hb_000078_140--Hb_074197_040 Hb_032202_220 Hb_032202_220 Hb_000078_140--Hb_032202_220 Hb_003098_070 Hb_003098_070 Hb_000078_140--Hb_003098_070 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400 Hb_004705_160 Hb_004705_160 Hb_000862_100--Hb_004705_160 Hb_068079_010 Hb_068079_010 Hb_000862_100--Hb_068079_010 Hb_000862_100--Hb_000815_300 Hb_001159_060 Hb_001159_060 Hb_000862_100--Hb_001159_060 Hb_000862_100--Hb_000406_210 Hb_005694_060 Hb_005694_060 Hb_015884_020--Hb_005694_060 Hb_001117_110 Hb_001117_110 Hb_015884_020--Hb_001117_110 Hb_019654_020 Hb_019654_020 Hb_015884_020--Hb_019654_020 Hb_000979_130 Hb_000979_130 Hb_015884_020--Hb_000979_130 Hb_002687_200 Hb_002687_200 Hb_015884_020--Hb_002687_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.96378 6.01679 10.8043 11.6288 4.08945 5.50025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.5903 3.68953 5.13146 8.13288 13.1503

CAGE analysis