Hb_001117_110

Information

Type -
Description -
Location Contig1117: 71715-83845
Sequence    

Annotation

kegg
ID vvi:100245514
description dynamin-2A
nr
ID XP_012066732.1
description PREDICTED: dynamin-2A [Jatropha curcas]
swissprot
ID Q9LQ55
description Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2
trembl
ID A0A067LDB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00287 PE=3 SV=1
Gene Ontology
ID GO:0003924
description dynamin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03536: 71839-83812
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001117_110 0.0 - - PREDICTED: dynamin-2A [Jatropha curcas]
2 Hb_005694_060 0.0470459853 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
3 Hb_030736_040 0.0527684712 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
4 Hb_015884_020 0.0673645143 - - PREDICTED: protein PIR [Jatropha curcas]
5 Hb_116349_120 0.0741477371 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_106890_010 0.0771263839 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
7 Hb_000088_260 0.0785249275 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
8 Hb_001141_240 0.0799479497 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
9 Hb_001504_060 0.079981316 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
10 Hb_055690_010 0.0802895559 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
11 Hb_068804_090 0.0816160303 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
12 Hb_004705_160 0.0820467625 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
13 Hb_000585_110 0.0835549177 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
14 Hb_005571_010 0.084983123 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
15 Hb_001159_060 0.0855069347 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
16 Hb_006970_020 0.0859686551 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
17 Hb_000979_130 0.0861078845 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
18 Hb_002249_080 0.0880939319 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
19 Hb_000510_190 0.0882631028 - - glutathione reductase [Hevea brasiliensis]
20 Hb_003355_010 0.0887026945 - - Heat shock 70 kDa protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001117_110 Hb_001117_110 Hb_005694_060 Hb_005694_060 Hb_001117_110--Hb_005694_060 Hb_030736_040 Hb_030736_040 Hb_001117_110--Hb_030736_040 Hb_015884_020 Hb_015884_020 Hb_001117_110--Hb_015884_020 Hb_116349_120 Hb_116349_120 Hb_001117_110--Hb_116349_120 Hb_106890_010 Hb_106890_010 Hb_001117_110--Hb_106890_010 Hb_000088_260 Hb_000088_260 Hb_001117_110--Hb_000088_260 Hb_005694_060--Hb_015884_020 Hb_000979_130 Hb_000979_130 Hb_005694_060--Hb_000979_130 Hb_000585_110 Hb_000585_110 Hb_005694_060--Hb_000585_110 Hb_005694_060--Hb_030736_040 Hb_005694_060--Hb_116349_120 Hb_030736_040--Hb_106890_010 Hb_055690_010 Hb_055690_010 Hb_030736_040--Hb_055690_010 Hb_003355_010 Hb_003355_010 Hb_030736_040--Hb_003355_010 Hb_068804_090 Hb_068804_090 Hb_030736_040--Hb_068804_090 Hb_008705_020 Hb_008705_020 Hb_030736_040--Hb_008705_020 Hb_019654_020 Hb_019654_020 Hb_015884_020--Hb_019654_020 Hb_006970_020 Hb_006970_020 Hb_015884_020--Hb_006970_020 Hb_015884_020--Hb_000979_130 Hb_002687_200 Hb_002687_200 Hb_015884_020--Hb_002687_200 Hb_000510_170 Hb_000510_170 Hb_116349_120--Hb_000510_170 Hb_013726_050 Hb_013726_050 Hb_116349_120--Hb_013726_050 Hb_000570_020 Hb_000570_020 Hb_116349_120--Hb_000570_020 Hb_000375_300 Hb_000375_300 Hb_116349_120--Hb_000375_300 Hb_106890_010--Hb_003355_010 Hb_003490_060 Hb_003490_060 Hb_106890_010--Hb_003490_060 Hb_005571_010 Hb_005571_010 Hb_106890_010--Hb_005571_010 Hb_007741_120 Hb_007741_120 Hb_106890_010--Hb_007741_120 Hb_106890_010--Hb_019654_020 Hb_000270_480 Hb_000270_480 Hb_000088_260--Hb_000270_480 Hb_001269_620 Hb_001269_620 Hb_000088_260--Hb_001269_620 Hb_000128_060 Hb_000128_060 Hb_000088_260--Hb_000128_060 Hb_001511_090 Hb_001511_090 Hb_000088_260--Hb_001511_090 Hb_001141_240 Hb_001141_240 Hb_000088_260--Hb_001141_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.4135 7.46816 10.8374 11.6448 3.56622 2.96571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.90467 3.59754 5.25261 8.0762 15.1037

CAGE analysis