Hb_106890_010

Information

Type -
Description -
Location Contig106890: 2007-13256
Sequence    

Annotation

kegg
ID pop:POPTR_0018s14640g
description hypothetical protein
nr
ID XP_012082557.1
description PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
swissprot
ID Q0WVX5
description Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS4 PE=2 SV=1
trembl
ID A0A067LPW0
description Starch synthase, chloroplastic/amyloplastic OS=Jatropha curcas GN=JCGZ_07972 PE=3 SV=1
Gene Ontology
ID GO:0009501
description probable starch synthase chloroplastic amyloplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02105: 2003-13153 , PASA_asmbl_02107: 10853-11410
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106890_010 0.0 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
2 Hb_003355_010 0.0394223226 - - Heat shock 70 kDa protein, putative [Ricinus communis]
3 Hb_030736_040 0.0562264297 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
4 Hb_003490_060 0.0628810886 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
5 Hb_005571_010 0.0669325846 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
6 Hb_007741_120 0.069322379 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
7 Hb_019654_020 0.0746355356 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
8 Hb_007933_040 0.075801134 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
9 Hb_001117_110 0.0771263839 - - PREDICTED: dynamin-2A [Jatropha curcas]
10 Hb_055690_010 0.0777037037 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
11 Hb_015884_020 0.0778207307 - - PREDICTED: protein PIR [Jatropha curcas]
12 Hb_006970_020 0.0797118603 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
13 Hb_005694_060 0.0809303733 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
14 Hb_001141_240 0.0809632279 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
15 Hb_000585_110 0.0810264216 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
16 Hb_001504_060 0.0826700585 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
17 Hb_002249_080 0.0829568386 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
18 Hb_000243_120 0.083731651 - - PREDICTED: MORC family CW-type zinc finger protein 3-like isoform X2 [Jatropha curcas]
19 Hb_003440_020 0.0837512024 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_002828_060 0.0859772461 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_106890_010 Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_106890_010--Hb_003355_010 Hb_030736_040 Hb_030736_040 Hb_106890_010--Hb_030736_040 Hb_003490_060 Hb_003490_060 Hb_106890_010--Hb_003490_060 Hb_005571_010 Hb_005571_010 Hb_106890_010--Hb_005571_010 Hb_007741_120 Hb_007741_120 Hb_106890_010--Hb_007741_120 Hb_019654_020 Hb_019654_020 Hb_106890_010--Hb_019654_020 Hb_003355_010--Hb_030736_040 Hb_003355_010--Hb_005571_010 Hb_000496_130 Hb_000496_130 Hb_003355_010--Hb_000496_130 Hb_003355_010--Hb_007741_120 Hb_003355_010--Hb_003490_060 Hb_001117_110 Hb_001117_110 Hb_030736_040--Hb_001117_110 Hb_055690_010 Hb_055690_010 Hb_030736_040--Hb_055690_010 Hb_068804_090 Hb_068804_090 Hb_030736_040--Hb_068804_090 Hb_008705_020 Hb_008705_020 Hb_030736_040--Hb_008705_020 Hb_002828_060 Hb_002828_060 Hb_003490_060--Hb_002828_060 Hb_000976_110 Hb_000976_110 Hb_003490_060--Hb_000976_110 Hb_002392_020 Hb_002392_020 Hb_003490_060--Hb_002392_020 Hb_000109_260 Hb_000109_260 Hb_003490_060--Hb_000109_260 Hb_023988_030 Hb_023988_030 Hb_005571_010--Hb_023988_030 Hb_002150_020 Hb_002150_020 Hb_005571_010--Hb_002150_020 Hb_005914_040 Hb_005914_040 Hb_005571_010--Hb_005914_040 Hb_005571_010--Hb_055690_010 Hb_006573_150 Hb_006573_150 Hb_007741_120--Hb_006573_150 Hb_007933_040 Hb_007933_040 Hb_007741_120--Hb_007933_040 Hb_003159_050 Hb_003159_050 Hb_007741_120--Hb_003159_050 Hb_001242_120 Hb_001242_120 Hb_007741_120--Hb_001242_120 Hb_000367_180 Hb_000367_180 Hb_019654_020--Hb_000367_180 Hb_000007_060 Hb_000007_060 Hb_019654_020--Hb_000007_060 Hb_015884_020 Hb_015884_020 Hb_019654_020--Hb_015884_020 Hb_000979_130 Hb_000979_130 Hb_019654_020--Hb_000979_130 Hb_000585_110 Hb_000585_110 Hb_019654_020--Hb_000585_110 Hb_003058_100 Hb_003058_100 Hb_019654_020--Hb_003058_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.21147 3.56958 7.60107 6.95075 2.59501 2.42929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.5561 2.60935 2.87706 7.15504 10.9248

CAGE analysis