Hb_001242_120

Information

Type -
Description -
Location Contig1242: 124211-135892
Sequence    

Annotation

kegg
ID tcc:TCM_035722
description Carboxypeptidase D
nr
ID XP_012073936.1
description PREDICTED: carboxypeptidase D [Jatropha curcas]
swissprot
ID P83852
description Carboxypeptidase D (Fragment) OS=Lophonetta specularioides GN=CPD PE=1 SV=1
trembl
ID A0A067KJY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08318 PE=4 SV=1
Gene Ontology
ID GO:0004181
description carboxypeptidase d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07346: 123776-124058 , PASA_asmbl_07348: 125826-126436 , PASA_asmbl_07349: 127345-127727 , PASA_asmbl_07350: 127935-135540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001242_120 0.0 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
2 Hb_012733_040 0.0632302975 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
3 Hb_005725_130 0.0636744068 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
4 Hb_002928_090 0.0676320386 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
5 Hb_002301_100 0.0756587048 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
6 Hb_001051_050 0.0797923723 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003878_150 0.0802016251 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
8 Hb_001269_600 0.083292379 - - protein phosphatase 2c, putative [Ricinus communis]
9 Hb_000120_370 0.084950204 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
10 Hb_000398_060 0.0860964372 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
11 Hb_002774_190 0.0863292953 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
12 Hb_007741_120 0.087364892 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
13 Hb_003159_050 0.088512935 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_002093_060 0.0919304829 - - phosphoprotein phosphatase, putative [Ricinus communis]
15 Hb_028487_070 0.0919941498 - - conserved hypothetical protein [Ricinus communis]
16 Hb_015099_030 0.0923517205 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
17 Hb_000903_010 0.0936524158 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
18 Hb_001195_400 0.0937997145 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
19 Hb_000078_140 0.0940078646 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
20 Hb_134849_010 0.0954792456 - - ATP synthase subunit d, putative [Ricinus communis]

Gene co-expression network

sample Hb_001242_120 Hb_001242_120 Hb_012733_040 Hb_012733_040 Hb_001242_120--Hb_012733_040 Hb_005725_130 Hb_005725_130 Hb_001242_120--Hb_005725_130 Hb_002928_090 Hb_002928_090 Hb_001242_120--Hb_002928_090 Hb_002301_100 Hb_002301_100 Hb_001242_120--Hb_002301_100 Hb_001051_050 Hb_001051_050 Hb_001242_120--Hb_001051_050 Hb_003878_150 Hb_003878_150 Hb_001242_120--Hb_003878_150 Hb_001195_400 Hb_001195_400 Hb_012733_040--Hb_001195_400 Hb_012733_040--Hb_002301_100 Hb_000364_050 Hb_000364_050 Hb_012733_040--Hb_000364_050 Hb_004452_120 Hb_004452_120 Hb_012733_040--Hb_004452_120 Hb_003159_050 Hb_003159_050 Hb_012733_040--Hb_003159_050 Hb_005725_130--Hb_003878_150 Hb_009569_040 Hb_009569_040 Hb_005725_130--Hb_009569_040 Hb_000120_370 Hb_000120_370 Hb_005725_130--Hb_000120_370 Hb_005725_130--Hb_002928_090 Hb_001662_100 Hb_001662_100 Hb_005725_130--Hb_001662_100 Hb_000014_040 Hb_000014_040 Hb_002928_090--Hb_000014_040 Hb_002928_090--Hb_001051_050 Hb_000390_050 Hb_000390_050 Hb_002928_090--Hb_000390_050 Hb_002928_090--Hb_009569_040 Hb_000398_060 Hb_000398_060 Hb_002301_100--Hb_000398_060 Hb_001828_180 Hb_001828_180 Hb_002301_100--Hb_001828_180 Hb_000363_190 Hb_000363_190 Hb_002301_100--Hb_000363_190 Hb_001493_150 Hb_001493_150 Hb_002301_100--Hb_001493_150 Hb_001051_050--Hb_000014_040 Hb_000116_190 Hb_000116_190 Hb_001051_050--Hb_000116_190 Hb_000645_280 Hb_000645_280 Hb_001051_050--Hb_000645_280 Hb_007821_030 Hb_007821_030 Hb_001051_050--Hb_007821_030 Hb_109000_020 Hb_109000_020 Hb_003878_150--Hb_109000_020 Hb_003878_150--Hb_001662_100 Hb_000256_150 Hb_000256_150 Hb_003878_150--Hb_000256_150 Hb_003883_060 Hb_003883_060 Hb_003878_150--Hb_003883_060 Hb_003878_150--Hb_001195_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.01005 1.62525 3.86874 5.45085 2.5438 2.36133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.46696 2.87729 1.56912 4.59265 5.57075

CAGE analysis