Hb_009569_040

Information

Type -
Description -
Location Contig9569: 49847-50551
Sequence    

Annotation

kegg
ID pop:POPTR_0013s14830g
description POPTRDRAFT_1097604; hypothetical protein
nr
ID XP_012074037.1
description PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08651 PE=4 SV=1
Gene Ontology
ID GO:0008168
description s-adenosyl-l-methionine-dependent methyltransferases superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63564: 48755-50580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009569_040 0.0 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
2 Hb_001662_100 0.0559567553 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
3 Hb_000256_150 0.0628845607 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
4 Hb_005725_130 0.0646301025 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
5 Hb_000049_020 0.0716849948 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
6 Hb_007481_010 0.0718475841 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
7 Hb_002414_050 0.0735707514 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
8 Hb_008511_020 0.0741409738 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
9 Hb_000787_160 0.0744509364 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
10 Hb_004679_030 0.0760231692 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
11 Hb_002897_090 0.0776237552 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000359_210 0.0778124548 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001014_210 0.077895396 - - CYP51 [Hevea brasiliensis]
14 Hb_003878_150 0.0781556958 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
15 Hb_005650_010 0.0786465729 - - ATP binding protein, putative [Ricinus communis]
16 Hb_003097_140 0.0791959059 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
17 Hb_003683_020 0.0794430539 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_001440_020 0.0796316983 - - exocyst componenet sec8, putative [Ricinus communis]
19 Hb_000056_130 0.0801362316 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
20 Hb_002928_090 0.0802116491 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]

Gene co-expression network

sample Hb_009569_040 Hb_009569_040 Hb_001662_100 Hb_001662_100 Hb_009569_040--Hb_001662_100 Hb_000256_150 Hb_000256_150 Hb_009569_040--Hb_000256_150 Hb_005725_130 Hb_005725_130 Hb_009569_040--Hb_005725_130 Hb_000049_020 Hb_000049_020 Hb_009569_040--Hb_000049_020 Hb_007481_010 Hb_007481_010 Hb_009569_040--Hb_007481_010 Hb_002414_050 Hb_002414_050 Hb_009569_040--Hb_002414_050 Hb_001662_100--Hb_002414_050 Hb_002883_030 Hb_002883_030 Hb_001662_100--Hb_002883_030 Hb_003544_160 Hb_003544_160 Hb_001662_100--Hb_003544_160 Hb_000787_160 Hb_000787_160 Hb_001662_100--Hb_000787_160 Hb_003878_150 Hb_003878_150 Hb_001662_100--Hb_003878_150 Hb_000256_150--Hb_000049_020 Hb_000300_270 Hb_000300_270 Hb_000256_150--Hb_000300_270 Hb_000256_150--Hb_007481_010 Hb_001269_330 Hb_001269_330 Hb_000256_150--Hb_001269_330 Hb_004452_110 Hb_004452_110 Hb_000256_150--Hb_004452_110 Hb_005725_130--Hb_003878_150 Hb_001242_120 Hb_001242_120 Hb_005725_130--Hb_001242_120 Hb_000120_370 Hb_000120_370 Hb_005725_130--Hb_000120_370 Hb_002928_090 Hb_002928_090 Hb_005725_130--Hb_002928_090 Hb_005725_130--Hb_001662_100 Hb_000049_020--Hb_000300_270 Hb_000345_160 Hb_000345_160 Hb_000049_020--Hb_000345_160 Hb_004102_170 Hb_004102_170 Hb_000049_020--Hb_004102_170 Hb_000049_020--Hb_002883_030 Hb_000215_300 Hb_000215_300 Hb_000049_020--Hb_000215_300 Hb_003528_030 Hb_003528_030 Hb_007481_010--Hb_003528_030 Hb_000352_300 Hb_000352_300 Hb_007481_010--Hb_000352_300 Hb_007481_010--Hb_001269_330 Hb_000477_100 Hb_000477_100 Hb_007481_010--Hb_000477_100 Hb_000046_500 Hb_000046_500 Hb_007481_010--Hb_000046_500 Hb_002414_050--Hb_003544_160 Hb_000022_020 Hb_000022_020 Hb_002414_050--Hb_000022_020 Hb_003517_040 Hb_003517_040 Hb_002414_050--Hb_003517_040 Hb_002414_050--Hb_004452_110 Hb_056691_060 Hb_056691_060 Hb_002414_050--Hb_056691_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.61453 6.75453 7.78033 18.3999 8.59481 10.8104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.20978 7.24239 8.09739 12.1419 14.461

CAGE analysis