Hb_000352_300

Information

Type -
Description -
Location Contig352: 243648-244961
Sequence    

Annotation

kegg
ID tcc:TCM_047036
description Eukaryotic release factor 1-3
nr
ID XP_012067421.1
description PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
swissprot
ID P35614
description Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=1 SV=1
trembl
ID A0A067L0F2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26920 PE=4 SV=1
Gene Ontology
ID GO:0016149
description eukaryotic peptide chain release factor subunit 1-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36594: 243386-247501
cDNA
(Sanger)
(ID:Location)		 018_F04.ab1: 244435-247492 , 027_H21.ab1: 244304-247492

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_300 0.0 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
2 Hb_007481_010 0.0514942593 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
3 Hb_003528_030 0.0580126803 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
4 Hb_000184_070 0.0648448624 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
5 Hb_000477_100 0.0653141868 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
6 Hb_000046_500 0.0687478836 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
7 Hb_003683_020 0.0690274462 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_001789_030 0.0695786502 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
9 Hb_001703_050 0.0704692083 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
10 Hb_002728_080 0.0730736583 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_000163_090 0.0757921001 - - gamma-tubulin complex component, putative [Ricinus communis]
12 Hb_000161_210 0.0770926489 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
13 Hb_000477_050 0.0771254117 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
14 Hb_002026_150 0.0790478023 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
15 Hb_005797_010 0.0818365013 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
16 Hb_000146_040 0.081839217 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
17 Hb_010142_020 0.0824967525 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001014_210 0.0825425402 - - CYP51 [Hevea brasiliensis]
19 Hb_001821_150 0.0828767262 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
20 Hb_009569_040 0.0830559864 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]

Gene co-expression network

sample Hb_000352_300 Hb_000352_300 Hb_007481_010 Hb_007481_010 Hb_000352_300--Hb_007481_010 Hb_003528_030 Hb_003528_030 Hb_000352_300--Hb_003528_030 Hb_000184_070 Hb_000184_070 Hb_000352_300--Hb_000184_070 Hb_000477_100 Hb_000477_100 Hb_000352_300--Hb_000477_100 Hb_000046_500 Hb_000046_500 Hb_000352_300--Hb_000046_500 Hb_003683_020 Hb_003683_020 Hb_000352_300--Hb_003683_020 Hb_007481_010--Hb_003528_030 Hb_001269_330 Hb_001269_330 Hb_007481_010--Hb_001269_330 Hb_000256_150 Hb_000256_150 Hb_007481_010--Hb_000256_150 Hb_007481_010--Hb_000477_100 Hb_007481_010--Hb_000046_500 Hb_003528_030--Hb_003683_020 Hb_012498_010 Hb_012498_010 Hb_003528_030--Hb_012498_010 Hb_000477_050 Hb_000477_050 Hb_003528_030--Hb_000477_050 Hb_004990_010 Hb_004990_010 Hb_003528_030--Hb_004990_010 Hb_001789_030 Hb_001789_030 Hb_000184_070--Hb_001789_030 Hb_001703_050 Hb_001703_050 Hb_000184_070--Hb_001703_050 Hb_000163_090 Hb_000163_090 Hb_000184_070--Hb_000163_090 Hb_000371_090 Hb_000371_090 Hb_000184_070--Hb_000371_090 Hb_002675_030 Hb_002675_030 Hb_000184_070--Hb_002675_030 Hb_000477_100--Hb_000046_500 Hb_000146_040 Hb_000146_040 Hb_000477_100--Hb_000146_040 Hb_003097_140 Hb_003097_140 Hb_000477_100--Hb_003097_140 Hb_001051_070 Hb_001051_070 Hb_000477_100--Hb_001051_070 Hb_019181_040 Hb_019181_040 Hb_000046_500--Hb_019181_040 Hb_002989_020 Hb_002989_020 Hb_000046_500--Hb_002989_020 Hb_079526_040 Hb_079526_040 Hb_000046_500--Hb_079526_040 Hb_002071_070 Hb_002071_070 Hb_000046_500--Hb_002071_070 Hb_003683_020--Hb_012498_010 Hb_010142_020 Hb_010142_020 Hb_003683_020--Hb_010142_020 Hb_013399_020 Hb_013399_020 Hb_003683_020--Hb_013399_020 Hb_000159_090 Hb_000159_090 Hb_003683_020--Hb_000159_090 Hb_000260_330 Hb_000260_330 Hb_003683_020--Hb_000260_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9566 11.1568 16.2251 29.9714 16.9879 14.9576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8196 10.7467 15.0998 23.4853 15.0175

CAGE analysis