Hb_000163_090

Information

Type -
Description -
Location Contig163: 59162-65602
Sequence    

Annotation

kegg
ID rcu:RCOM_1178380
description gamma-tubulin complex component, putative
nr
ID XP_002523094.1
description gamma-tubulin complex component, putative [Ricinus communis]
swissprot
ID Q9M350
description Gamma-tubulin complex component 4 OS=Arabidopsis thaliana GN=GCP4 PE=2 SV=2
trembl
ID B9SAS5
description Gamma-tubulin complex component, putative OS=Ricinus communis GN=RCOM_1178380 PE=4 SV=1
Gene Ontology
ID GO:0000922
description gamma-tubulin complex component 4 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14804: 59480-60060 , PASA_asmbl_14805: 60878-64459 , PASA_asmbl_14806: 64473-65225
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_090 0.0 - - gamma-tubulin complex component, putative [Ricinus communis]
2 Hb_001518_080 0.0653135498 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
3 Hb_001789_030 0.0656751738 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
4 Hb_001377_310 0.0680043524 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
5 Hb_008511_020 0.0713805702 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
6 Hb_000184_070 0.0728992866 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
7 Hb_030982_010 0.0732744518 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000170_090 0.0735585181 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
9 Hb_000345_160 0.0735789199 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
10 Hb_000352_300 0.0757921001 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
11 Hb_001002_060 0.0767560867 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
12 Hb_012733_070 0.0780684535 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
13 Hb_012506_030 0.0793586729 - - AP-2 complex subunit alpha, putative [Ricinus communis]
14 Hb_000373_080 0.0794587573 - - PREDICTED: serine decarboxylase [Jatropha curcas]
15 Hb_001584_140 0.079843593 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
16 Hb_015807_050 0.0802183904 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
17 Hb_001269_330 0.0810032486 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
18 Hb_016777_040 0.0811084893 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
19 Hb_003528_030 0.0811819007 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
20 Hb_000477_050 0.0812973829 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_000163_090 Hb_000163_090 Hb_001518_080 Hb_001518_080 Hb_000163_090--Hb_001518_080 Hb_001789_030 Hb_001789_030 Hb_000163_090--Hb_001789_030 Hb_001377_310 Hb_001377_310 Hb_000163_090--Hb_001377_310 Hb_008511_020 Hb_008511_020 Hb_000163_090--Hb_008511_020 Hb_000184_070 Hb_000184_070 Hb_000163_090--Hb_000184_070 Hb_030982_010 Hb_030982_010 Hb_000163_090--Hb_030982_010 Hb_000635_090 Hb_000635_090 Hb_001518_080--Hb_000635_090 Hb_000214_050 Hb_000214_050 Hb_001518_080--Hb_000214_050 Hb_079526_040 Hb_079526_040 Hb_001518_080--Hb_079526_040 Hb_002027_080 Hb_002027_080 Hb_001518_080--Hb_002027_080 Hb_002811_270 Hb_002811_270 Hb_001518_080--Hb_002811_270 Hb_015807_050 Hb_015807_050 Hb_001518_080--Hb_015807_050 Hb_000352_300 Hb_000352_300 Hb_001789_030--Hb_000352_300 Hb_001789_030--Hb_000184_070 Hb_000637_150 Hb_000637_150 Hb_001789_030--Hb_000637_150 Hb_001584_140 Hb_001584_140 Hb_001789_030--Hb_001584_140 Hb_001009_320 Hb_001009_320 Hb_001789_030--Hb_001009_320 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_000170_090 Hb_000170_090 Hb_001377_310--Hb_000170_090 Hb_005460_050 Hb_005460_050 Hb_001377_310--Hb_005460_050 Hb_000373_080 Hb_000373_080 Hb_001377_310--Hb_000373_080 Hb_003861_050 Hb_003861_050 Hb_001377_310--Hb_003861_050 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060 Hb_002675_030 Hb_002675_030 Hb_008511_020--Hb_002675_030 Hb_001440_020 Hb_001440_020 Hb_008511_020--Hb_001440_020 Hb_008511_020--Hb_002027_080 Hb_008511_020--Hb_001518_080 Hb_000049_020 Hb_000049_020 Hb_008511_020--Hb_000049_020 Hb_000345_160 Hb_000345_160 Hb_008511_020--Hb_000345_160 Hb_000184_070--Hb_000352_300 Hb_001703_050 Hb_001703_050 Hb_000184_070--Hb_001703_050 Hb_000371_090 Hb_000371_090 Hb_000184_070--Hb_000371_090 Hb_000184_070--Hb_002675_030 Hb_121089_030 Hb_121089_030 Hb_030982_010--Hb_121089_030 Hb_001246_130 Hb_001246_130 Hb_030982_010--Hb_001246_130 Hb_000320_290 Hb_000320_290 Hb_030982_010--Hb_000320_290 Hb_006120_050 Hb_006120_050 Hb_030982_010--Hb_006120_050 Hb_021165_010 Hb_021165_010 Hb_030982_010--Hb_021165_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.28232 3.56457 6.67659 7.93814 5.20332 6.11919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.7493 2.74457 3.78438 6.16409 5.17248

CAGE analysis