Hb_030982_010

Information

Type -
Description -
Location Contig30982: 8148-12409
Sequence    

Annotation

kegg
ID rcu:RCOM_0106290
description hypothetical protein
nr
ID XP_002524526.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEV7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0106290 PE=4 SV=1
Gene Ontology
ID GO:0000394
description nhl domain-containing protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32758: 8268-12338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030982_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_121089_030 0.0616871474 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
3 Hb_001246_130 0.0693233166 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
4 Hb_000320_290 0.0701090084 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
5 Hb_006120_050 0.0713388088 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
6 Hb_000163_090 0.0732744518 - - gamma-tubulin complex component, putative [Ricinus communis]
7 Hb_021165_010 0.0743988348 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
8 Hb_002007_260 0.075221479 - - beta-mannosidase, putative [Ricinus communis]
9 Hb_001703_050 0.0768313286 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
10 Hb_000702_090 0.0768552747 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
11 Hb_003038_040 0.0783202668 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
12 Hb_159809_070 0.0794158296 - - phospholipase A-2-activating protein, putative [Ricinus communis]
13 Hb_008511_020 0.0803421577 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
14 Hb_010042_030 0.0806235366 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
15 Hb_065500_020 0.0816293748 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
16 Hb_012733_070 0.0830984409 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
17 Hb_001227_120 0.0833828542 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
18 Hb_011310_110 0.0838585367 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
19 Hb_000261_210 0.0842077304 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
20 Hb_188063_050 0.084249535 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_030982_010 Hb_030982_010 Hb_121089_030 Hb_121089_030 Hb_030982_010--Hb_121089_030 Hb_001246_130 Hb_001246_130 Hb_030982_010--Hb_001246_130 Hb_000320_290 Hb_000320_290 Hb_030982_010--Hb_000320_290 Hb_006120_050 Hb_006120_050 Hb_030982_010--Hb_006120_050 Hb_000163_090 Hb_000163_090 Hb_030982_010--Hb_000163_090 Hb_021165_010 Hb_021165_010 Hb_030982_010--Hb_021165_010 Hb_000017_230 Hb_000017_230 Hb_121089_030--Hb_000017_230 Hb_121089_030--Hb_021165_010 Hb_121089_030--Hb_000320_290 Hb_001552_030 Hb_001552_030 Hb_121089_030--Hb_001552_030 Hb_010042_030 Hb_010042_030 Hb_121089_030--Hb_010042_030 Hb_002007_260 Hb_002007_260 Hb_001246_130--Hb_002007_260 Hb_001246_130--Hb_006120_050 Hb_000054_040 Hb_000054_040 Hb_001246_130--Hb_000054_040 Hb_002552_040 Hb_002552_040 Hb_001246_130--Hb_002552_040 Hb_002045_170 Hb_002045_170 Hb_001246_130--Hb_002045_170 Hb_000320_290--Hb_000054_040 Hb_000320_290--Hb_010042_030 Hb_188063_050 Hb_188063_050 Hb_000320_290--Hb_188063_050 Hb_000098_050 Hb_000098_050 Hb_000320_290--Hb_000098_050 Hb_011310_110 Hb_011310_110 Hb_006120_050--Hb_011310_110 Hb_010672_020 Hb_010672_020 Hb_006120_050--Hb_010672_020 Hb_002272_240 Hb_002272_240 Hb_006120_050--Hb_002272_240 Hb_002687_180 Hb_002687_180 Hb_006120_050--Hb_002687_180 Hb_006120_050--Hb_121089_030 Hb_001518_080 Hb_001518_080 Hb_000163_090--Hb_001518_080 Hb_001789_030 Hb_001789_030 Hb_000163_090--Hb_001789_030 Hb_001377_310 Hb_001377_310 Hb_000163_090--Hb_001377_310 Hb_008511_020 Hb_008511_020 Hb_000163_090--Hb_008511_020 Hb_000184_070 Hb_000184_070 Hb_000163_090--Hb_000184_070 Hb_000702_090 Hb_000702_090 Hb_021165_010--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_021165_010--Hb_016172_030 Hb_008289_040 Hb_008289_040 Hb_021165_010--Hb_008289_040 Hb_021165_010--Hb_000017_230 Hb_060980_010 Hb_060980_010 Hb_021165_010--Hb_060980_010 Hb_001114_110 Hb_001114_110 Hb_021165_010--Hb_001114_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.96447 4.73806 8.80989 10.7596 4.71932 5.40247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.87966 2.3164 3.84675 7.4804 6.56318

CAGE analysis