Hb_008511_020

Information

Type -
Description -
Location Contig8511: 27809-35613
Sequence    

Annotation

kegg
ID rcu:RCOM_1674930
description coatomer gamma subunit, putative
nr
ID XP_012069877.1
description PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
swissprot
ID Q6Z382
description Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica GN=Os07g0201100 PE=2 SV=1
trembl
ID A0A067LP51
description Coatomer subunit gamma OS=Jatropha curcas GN=JCGZ_10084 PE=3 SV=1
Gene Ontology
ID GO:0030126
description coatomer subunit gamma-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60409: 27830-35569
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008511_020 0.0 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
2 Hb_002675_030 0.0576300586 - - coatomer beta subunit, putative [Ricinus communis]
3 Hb_001440_020 0.0639542997 - - exocyst componenet sec8, putative [Ricinus communis]
4 Hb_002027_080 0.0666061494 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
5 Hb_001518_080 0.0666486925 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
6 Hb_000049_020 0.0689610401 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
7 Hb_000345_160 0.0690226987 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
8 Hb_002883_030 0.0693067382 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
9 Hb_012330_010 0.0706135414 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
10 Hb_000163_090 0.0713805702 - - gamma-tubulin complex component, putative [Ricinus communis]
11 Hb_000960_040 0.0725949348 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
12 Hb_009569_040 0.0741409738 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
13 Hb_002897_090 0.0746713869 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000056_130 0.0751891422 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
15 Hb_000086_440 0.0761092625 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
16 Hb_001488_220 0.0775516029 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
17 Hb_008014_040 0.077653048 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
18 Hb_005650_010 0.0776694531 - - ATP binding protein, putative [Ricinus communis]
19 Hb_004679_030 0.0787604082 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
20 Hb_159809_030 0.0798763521 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_008511_020 Hb_008511_020 Hb_002675_030 Hb_002675_030 Hb_008511_020--Hb_002675_030 Hb_001440_020 Hb_001440_020 Hb_008511_020--Hb_001440_020 Hb_002027_080 Hb_002027_080 Hb_008511_020--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_008511_020--Hb_001518_080 Hb_000049_020 Hb_000049_020 Hb_008511_020--Hb_000049_020 Hb_000345_160 Hb_000345_160 Hb_008511_020--Hb_000345_160 Hb_002675_030--Hb_001440_020 Hb_000579_240 Hb_000579_240 Hb_002675_030--Hb_000579_240 Hb_000960_040 Hb_000960_040 Hb_002675_030--Hb_000960_040 Hb_001821_150 Hb_001821_150 Hb_002675_030--Hb_001821_150 Hb_000264_350 Hb_000264_350 Hb_002675_030--Hb_000264_350 Hb_012518_070 Hb_012518_070 Hb_001440_020--Hb_012518_070 Hb_012114_100 Hb_012114_100 Hb_001440_020--Hb_012114_100 Hb_003097_140 Hb_003097_140 Hb_001440_020--Hb_003097_140 Hb_001329_250 Hb_001329_250 Hb_001440_020--Hb_001329_250 Hb_002897_090 Hb_002897_090 Hb_002027_080--Hb_002897_090 Hb_002027_080--Hb_001518_080 Hb_003581_200 Hb_003581_200 Hb_002027_080--Hb_003581_200 Hb_000441_090 Hb_000441_090 Hb_002027_080--Hb_000441_090 Hb_000773_040 Hb_000773_040 Hb_002027_080--Hb_000773_040 Hb_000635_090 Hb_000635_090 Hb_002027_080--Hb_000635_090 Hb_001518_080--Hb_000635_090 Hb_000214_050 Hb_000214_050 Hb_001518_080--Hb_000214_050 Hb_079526_040 Hb_079526_040 Hb_001518_080--Hb_079526_040 Hb_002811_270 Hb_002811_270 Hb_001518_080--Hb_002811_270 Hb_015807_050 Hb_015807_050 Hb_001518_080--Hb_015807_050 Hb_000300_270 Hb_000300_270 Hb_000049_020--Hb_000300_270 Hb_000049_020--Hb_000345_160 Hb_000256_150 Hb_000256_150 Hb_000049_020--Hb_000256_150 Hb_004102_170 Hb_004102_170 Hb_000049_020--Hb_004102_170 Hb_002883_030 Hb_002883_030 Hb_000049_020--Hb_002883_030 Hb_000215_300 Hb_000215_300 Hb_000049_020--Hb_000215_300 Hb_004037_020 Hb_004037_020 Hb_000345_160--Hb_004037_020 Hb_004705_170 Hb_004705_170 Hb_000345_160--Hb_004705_170 Hb_001481_060 Hb_001481_060 Hb_000345_160--Hb_001481_060 Hb_000170_090 Hb_000170_090 Hb_000345_160--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000345_160--Hb_004452_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.4245 35.5274 44.6995 67.9632 37.4368 46.9248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.7991 18.9691 32.0757 44.3862 59.4001

CAGE analysis