Hb_000256_150

Information

Type -
Description -
Location Contig256: 205884-213224
Sequence    

Annotation

kegg
ID rcu:RCOM_0922580
description hypothetical protein
nr
ID XP_012076471.1
description PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
swissprot
ID Q9FY61
description Trafficking protein particle complex II-specific subunit 120 homolog OS=Arabidopsis thaliana GN=TRS120 PE=1 SV=1
trembl
ID A0A067KBD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07117 PE=4 SV=1
Gene Ontology
ID GO:0000919
description trafficking protein particle complex subunit 9 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26691: 206204-213178 , PASA_asmbl_26692: 208196-208608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_150 0.0 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
2 Hb_000049_020 0.0554533317 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
3 Hb_000300_270 0.0558917111 - - cationic amino acid transporter, putative [Ricinus communis]
4 Hb_007481_010 0.0576421853 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
5 Hb_001269_330 0.0618743678 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
6 Hb_009569_040 0.0628845607 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
7 Hb_004452_110 0.0668817809 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
8 Hb_003878_150 0.0697794457 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
9 Hb_004055_120 0.0706863932 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
10 Hb_002046_160 0.0719244329 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000046_500 0.073741801 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
12 Hb_000787_160 0.0746055174 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
13 Hb_000345_160 0.0751326312 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
14 Hb_004102_170 0.0757392709 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
15 Hb_019181_040 0.0758742572 - - component of oligomeric golgi complex, putative [Ricinus communis]
16 Hb_003025_100 0.0777155423 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
17 Hb_001662_100 0.0783195715 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
18 Hb_012498_010 0.0784697801 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
19 Hb_000477_100 0.0797176819 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
20 Hb_004705_170 0.0797907256 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]

Gene co-expression network

sample Hb_000256_150 Hb_000256_150 Hb_000049_020 Hb_000049_020 Hb_000256_150--Hb_000049_020 Hb_000300_270 Hb_000300_270 Hb_000256_150--Hb_000300_270 Hb_007481_010 Hb_007481_010 Hb_000256_150--Hb_007481_010 Hb_001269_330 Hb_001269_330 Hb_000256_150--Hb_001269_330 Hb_009569_040 Hb_009569_040 Hb_000256_150--Hb_009569_040 Hb_004452_110 Hb_004452_110 Hb_000256_150--Hb_004452_110 Hb_000049_020--Hb_000300_270 Hb_000345_160 Hb_000345_160 Hb_000049_020--Hb_000345_160 Hb_004102_170 Hb_004102_170 Hb_000049_020--Hb_004102_170 Hb_002883_030 Hb_002883_030 Hb_000049_020--Hb_002883_030 Hb_000215_300 Hb_000215_300 Hb_000049_020--Hb_000215_300 Hb_002046_160 Hb_002046_160 Hb_000300_270--Hb_002046_160 Hb_000300_270--Hb_002883_030 Hb_000300_270--Hb_004452_110 Hb_000300_270--Hb_000345_160 Hb_003528_030 Hb_003528_030 Hb_007481_010--Hb_003528_030 Hb_000352_300 Hb_000352_300 Hb_007481_010--Hb_000352_300 Hb_007481_010--Hb_001269_330 Hb_000477_100 Hb_000477_100 Hb_007481_010--Hb_000477_100 Hb_000046_500 Hb_000046_500 Hb_007481_010--Hb_000046_500 Hb_001087_030 Hb_001087_030 Hb_001269_330--Hb_001087_030 Hb_019181_040 Hb_019181_040 Hb_001269_330--Hb_019181_040 Hb_012498_010 Hb_012498_010 Hb_001269_330--Hb_012498_010 Hb_001269_330--Hb_000046_500 Hb_001662_100 Hb_001662_100 Hb_009569_040--Hb_001662_100 Hb_005725_130 Hb_005725_130 Hb_009569_040--Hb_005725_130 Hb_009569_040--Hb_000049_020 Hb_009569_040--Hb_007481_010 Hb_002414_050 Hb_002414_050 Hb_009569_040--Hb_002414_050 Hb_004452_110--Hb_000345_160 Hb_000976_140 Hb_000976_140 Hb_004452_110--Hb_000976_140 Hb_004452_110--Hb_002046_160 Hb_005730_040 Hb_005730_040 Hb_004452_110--Hb_005730_040 Hb_000313_220 Hb_000313_220 Hb_004452_110--Hb_000313_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.67975 5.46208 7.21291 14.2344 5.55118 7.34048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.12317 6.72722 6.63337 7.05294 9.51676

CAGE analysis