Hb_001269_330

Information

Type -
Description -
Location Contig1269: 328119-341113
Sequence    

Annotation

kegg
ID pop:POPTR_0007s07820g
description POPTRDRAFT_562828; hypothetical protein
nr
ID XP_012086354.1
description PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
swissprot
ID Q92546
description RAB6A-GEF complex partner protein 2 OS=Homo sapiens GN=RGP1 PE=1 SV=1
trembl
ID A0A067JPF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22876 PE=4 SV=1
Gene Ontology
ID GO:0042546
description immunoglobulin e-set

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08195: 327646-340808 , PASA_asmbl_08196: 329866-339958
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_330 0.0 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
2 Hb_007481_010 0.0566595773 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
3 Hb_000256_150 0.0618743678 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
4 Hb_001087_030 0.0733186228 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
5 Hb_019181_040 0.0739515393 - - component of oligomeric golgi complex, putative [Ricinus communis]
6 Hb_012498_010 0.0747515382 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
7 Hb_000046_500 0.076491011 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
8 Hb_005291_050 0.078299644 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
9 Hb_003528_030 0.0789553171 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
10 Hb_079526_040 0.0796902996 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
11 Hb_003683_020 0.0802420164 - - serine/threonine protein kinase, putative [Ricinus communis]
12 Hb_008970_030 0.0804224227 - - arf gtpase-activating protein, putative [Ricinus communis]
13 Hb_000107_230 0.0808397555 - - unknown [Medicago truncatula]
14 Hb_000163_090 0.0810032486 - - gamma-tubulin complex component, putative [Ricinus communis]
15 Hb_005797_010 0.081711417 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
16 Hb_000637_110 0.0822199664 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
17 Hb_030736_020 0.083020082 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006153_070 0.084261647 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
19 Hb_009898_050 0.084337199 - - PREDICTED: beta-taxilin [Jatropha curcas]
20 Hb_000352_300 0.0844165692 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_330 Hb_001269_330 Hb_007481_010 Hb_007481_010 Hb_001269_330--Hb_007481_010 Hb_000256_150 Hb_000256_150 Hb_001269_330--Hb_000256_150 Hb_001087_030 Hb_001087_030 Hb_001269_330--Hb_001087_030 Hb_019181_040 Hb_019181_040 Hb_001269_330--Hb_019181_040 Hb_012498_010 Hb_012498_010 Hb_001269_330--Hb_012498_010 Hb_000046_500 Hb_000046_500 Hb_001269_330--Hb_000046_500 Hb_003528_030 Hb_003528_030 Hb_007481_010--Hb_003528_030 Hb_000352_300 Hb_000352_300 Hb_007481_010--Hb_000352_300 Hb_007481_010--Hb_000256_150 Hb_000477_100 Hb_000477_100 Hb_007481_010--Hb_000477_100 Hb_007481_010--Hb_000046_500 Hb_000049_020 Hb_000049_020 Hb_000256_150--Hb_000049_020 Hb_000300_270 Hb_000300_270 Hb_000256_150--Hb_000300_270 Hb_009569_040 Hb_009569_040 Hb_000256_150--Hb_009569_040 Hb_004452_110 Hb_004452_110 Hb_000256_150--Hb_004452_110 Hb_003929_170 Hb_003929_170 Hb_001087_030--Hb_003929_170 Hb_004754_050 Hb_004754_050 Hb_001087_030--Hb_004754_050 Hb_000139_530 Hb_000139_530 Hb_001087_030--Hb_000139_530 Hb_000058_130 Hb_000058_130 Hb_001087_030--Hb_000058_130 Hb_001087_030--Hb_000049_020 Hb_019181_040--Hb_000046_500 Hb_000349_260 Hb_000349_260 Hb_019181_040--Hb_000349_260 Hb_000317_040 Hb_000317_040 Hb_019181_040--Hb_000317_040 Hb_019181_040--Hb_004754_050 Hb_000703_190 Hb_000703_190 Hb_019181_040--Hb_000703_190 Hb_004109_080 Hb_004109_080 Hb_012498_010--Hb_004109_080 Hb_003683_020 Hb_003683_020 Hb_012498_010--Hb_003683_020 Hb_005291_050 Hb_005291_050 Hb_012498_010--Hb_005291_050 Hb_000156_010 Hb_000156_010 Hb_012498_010--Hb_000156_010 Hb_004567_090 Hb_004567_090 Hb_012498_010--Hb_004567_090 Hb_010142_020 Hb_010142_020 Hb_012498_010--Hb_010142_020 Hb_000046_500--Hb_000477_100 Hb_002989_020 Hb_002989_020 Hb_000046_500--Hb_002989_020 Hb_079526_040 Hb_079526_040 Hb_000046_500--Hb_079526_040 Hb_002071_070 Hb_002071_070 Hb_000046_500--Hb_002071_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.63893 2.50087 4.82808 7.54228 3.87236 4.34447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62762 3.09745 4.46254 3.76648 4.27377

CAGE analysis