Hb_003929_170

Information

Type -
Description -
Location Contig3929: 93916-99167
Sequence    

Annotation

kegg
ID rcu:RCOM_1003490
description novel plant snare, putative
nr
ID XP_012084194.1
description PREDICTED: novel plant SNARE 13 [Jatropha curcas]
swissprot
ID Q9LRP1
description Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1
trembl
ID A0A067JYW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19083 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39361: 93963-99097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_170 0.0 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
2 Hb_001087_030 0.0669483952 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
3 Hb_000046_570 0.0683634119 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
4 Hb_000207_150 0.0696532228 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
5 Hb_000009_400 0.0708545902 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
6 Hb_000390_250 0.075806169 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
7 Hb_000107_230 0.0771272171 - - unknown [Medicago truncatula]
8 Hb_005276_060 0.078317867 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
9 Hb_012395_170 0.0797345463 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000331_090 0.0807808978 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
11 Hb_002311_380 0.081478823 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
12 Hb_005381_020 0.0823145167 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
13 Hb_001405_210 0.0825423518 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
14 Hb_000494_080 0.083575529 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
15 Hb_000096_120 0.0849360284 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
16 Hb_000058_130 0.0855652072 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
17 Hb_005797_010 0.0861624392 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
18 Hb_000313_220 0.0864227491 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
19 Hb_007062_040 0.0867849683 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
20 Hb_000139_530 0.0868367231 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003929_170 Hb_003929_170 Hb_001087_030 Hb_001087_030 Hb_003929_170--Hb_001087_030 Hb_000046_570 Hb_000046_570 Hb_003929_170--Hb_000046_570 Hb_000207_150 Hb_000207_150 Hb_003929_170--Hb_000207_150 Hb_000009_400 Hb_000009_400 Hb_003929_170--Hb_000009_400 Hb_000390_250 Hb_000390_250 Hb_003929_170--Hb_000390_250 Hb_000107_230 Hb_000107_230 Hb_003929_170--Hb_000107_230 Hb_004754_050 Hb_004754_050 Hb_001087_030--Hb_004754_050 Hb_001269_330 Hb_001269_330 Hb_001087_030--Hb_001269_330 Hb_000139_530 Hb_000139_530 Hb_001087_030--Hb_000139_530 Hb_000058_130 Hb_000058_130 Hb_001087_030--Hb_000058_130 Hb_000049_020 Hb_000049_020 Hb_001087_030--Hb_000049_020 Hb_007062_040 Hb_007062_040 Hb_000046_570--Hb_007062_040 Hb_004586_060 Hb_004586_060 Hb_000046_570--Hb_004586_060 Hb_007248_030 Hb_007248_030 Hb_000046_570--Hb_007248_030 Hb_000046_570--Hb_000390_250 Hb_001405_210 Hb_001405_210 Hb_000046_570--Hb_001405_210 Hb_003912_040 Hb_003912_040 Hb_000046_570--Hb_003912_040 Hb_000207_150--Hb_000107_230 Hb_000207_150--Hb_000058_130 Hb_000331_090 Hb_000331_090 Hb_000207_150--Hb_000331_090 Hb_007831_010 Hb_007831_010 Hb_000207_150--Hb_007831_010 Hb_000579_120 Hb_000579_120 Hb_000207_150--Hb_000579_120 Hb_005276_060 Hb_005276_060 Hb_000009_400--Hb_005276_060 Hb_000009_400--Hb_000046_570 Hb_000322_070 Hb_000322_070 Hb_000009_400--Hb_000322_070 Hb_005797_010 Hb_005797_010 Hb_000009_400--Hb_005797_010 Hb_012322_020 Hb_012322_020 Hb_000009_400--Hb_012322_020 Hb_000329_230 Hb_000329_230 Hb_000390_250--Hb_000329_230 Hb_001863_360 Hb_001863_360 Hb_000390_250--Hb_001863_360 Hb_005381_020 Hb_005381_020 Hb_000390_250--Hb_005381_020 Hb_001366_090 Hb_001366_090 Hb_000390_250--Hb_001366_090 Hb_004157_100 Hb_004157_100 Hb_000107_230--Hb_004157_100 Hb_000107_230--Hb_007831_010 Hb_006588_170 Hb_006588_170 Hb_000107_230--Hb_006588_170 Hb_000594_050 Hb_000594_050 Hb_000107_230--Hb_000594_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.4988 27.009 41.3964 59.0282 22.956 30.9855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.9481 24.7462 20.4909 22.3513 25.4261

CAGE analysis