Hb_006588_170

Information

Type -
Description -
Location Contig6588: 106671-115861
Sequence    

Annotation

kegg
ID pop:POPTR_0016s11780g
description POPTRDRAFT_257531; hypothetical protein
nr
ID XP_012087929.1
description PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
swissprot
ID Q8LBZ4
description OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1
trembl
ID A0A067JKI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52887: 106354-115871
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006588_170 0.0 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
2 Hb_105328_020 0.056659463 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
3 Hb_013399_020 0.0637690547 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
4 Hb_000170_090 0.0694220737 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
5 Hb_000345_380 0.0707260559 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
6 Hb_001860_030 0.0715421116 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
7 Hb_000107_230 0.0723746057 - - unknown [Medicago truncatula]
8 Hb_011037_030 0.0726615901 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
9 Hb_007831_010 0.0738572208 - - PREDICTED: oligoribonuclease [Vitis vinifera]
10 Hb_000720_040 0.0738962655 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
11 Hb_000594_050 0.0748835495 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
12 Hb_000035_470 0.0753456116 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
13 Hb_000035_110 0.0755638746 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
14 Hb_000207_150 0.0756404464 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
15 Hb_002445_060 0.0760171681 - - arf gtpase-activating protein, putative [Ricinus communis]
16 Hb_028512_020 0.0762405668 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
17 Hb_000976_140 0.0770557015 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
18 Hb_000603_150 0.0787395485 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
19 Hb_006831_140 0.0788727196 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
20 Hb_168978_030 0.0794464998 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_006588_170 Hb_006588_170 Hb_105328_020 Hb_105328_020 Hb_006588_170--Hb_105328_020 Hb_013399_020 Hb_013399_020 Hb_006588_170--Hb_013399_020 Hb_000170_090 Hb_000170_090 Hb_006588_170--Hb_000170_090 Hb_000345_380 Hb_000345_380 Hb_006588_170--Hb_000345_380 Hb_001860_030 Hb_001860_030 Hb_006588_170--Hb_001860_030 Hb_000107_230 Hb_000107_230 Hb_006588_170--Hb_000107_230 Hb_105328_020--Hb_000170_090 Hb_105328_020--Hb_000345_380 Hb_011037_030 Hb_011037_030 Hb_105328_020--Hb_011037_030 Hb_105328_020--Hb_013399_020 Hb_000156_010 Hb_000156_010 Hb_105328_020--Hb_000156_010 Hb_013399_020--Hb_000170_090 Hb_000923_010 Hb_000923_010 Hb_013399_020--Hb_000923_010 Hb_000441_220 Hb_000441_220 Hb_013399_020--Hb_000441_220 Hb_003683_020 Hb_003683_020 Hb_013399_020--Hb_003683_020 Hb_093458_040 Hb_093458_040 Hb_013399_020--Hb_093458_040 Hb_001377_310 Hb_001377_310 Hb_000170_090--Hb_001377_310 Hb_004586_220 Hb_004586_220 Hb_000170_090--Hb_004586_220 Hb_000976_140 Hb_000976_140 Hb_000170_090--Hb_000976_140 Hb_000345_160 Hb_000345_160 Hb_000170_090--Hb_000345_160 Hb_000345_380--Hb_011037_030 Hb_000030_190 Hb_000030_190 Hb_000345_380--Hb_000030_190 Hb_000789_310 Hb_000789_310 Hb_000345_380--Hb_000789_310 Hb_008406_200 Hb_008406_200 Hb_000345_380--Hb_008406_200 Hb_001409_020 Hb_001409_020 Hb_000345_380--Hb_001409_020 Hb_000062_270 Hb_000062_270 Hb_001860_030--Hb_000062_270 Hb_028512_020 Hb_028512_020 Hb_001860_030--Hb_028512_020 Hb_001860_030--Hb_013399_020 Hb_000981_030 Hb_000981_030 Hb_001860_030--Hb_000981_030 Hb_004324_130 Hb_004324_130 Hb_001860_030--Hb_004324_130 Hb_001635_090 Hb_001635_090 Hb_001860_030--Hb_001635_090 Hb_000207_150 Hb_000207_150 Hb_000107_230--Hb_000207_150 Hb_004157_100 Hb_004157_100 Hb_000107_230--Hb_004157_100 Hb_007831_010 Hb_007831_010 Hb_000107_230--Hb_007831_010 Hb_000594_050 Hb_000594_050 Hb_000107_230--Hb_000594_050 Hb_003929_170 Hb_003929_170 Hb_000107_230--Hb_003929_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5236 15.767 21.9044 26.3876 15.8935 27.0098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.5509 18.0949 15.2592 19.923 14.8397

CAGE analysis