Hb_000062_270

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig62: 220961-228420
Sequence    

Annotation

kegg
ID rcu:RCOM_1081210
description transcription factor, putative
nr
ID XP_012085608.1
description PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FX53
description Trihelix transcription factor GT-1 OS=Arabidopsis thaliana GN=GT-1 PE=1 SV=1
trembl
ID A0A067JSB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17910 PE=4 SV=1
Gene Ontology
ID GO:0005634
description trihelix transcription factor gt-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51434: 220881-221969 , PASA_asmbl_51435: 220881-227269 , PASA_asmbl_51436: 225906-227171 , PASA_asmbl_51437: 222314-222599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_270 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
2 Hb_001860_030 0.0588280531 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
3 Hb_000170_090 0.0706475107 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
4 Hb_000258_110 0.0726406036 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
5 Hb_013399_020 0.075990204 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
6 Hb_004668_090 0.0817650661 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
7 Hb_004586_220 0.0819967831 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
8 Hb_007657_020 0.0826282672 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
9 Hb_000120_280 0.0842872793 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
10 Hb_028512_020 0.0846430464 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
11 Hb_002681_090 0.0852280532 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
12 Hb_002968_080 0.0855585275 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
13 Hb_007123_030 0.0872893848 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
14 Hb_001301_150 0.0889216065 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
15 Hb_000138_100 0.0889346006 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
16 Hb_000836_460 0.0901818356 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
17 Hb_004037_020 0.0911478082 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
18 Hb_005797_010 0.0917994951 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
19 Hb_039946_050 0.0918178823 - - catalytic, putative [Ricinus communis]
20 Hb_000981_030 0.0921610329 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_270 Hb_000062_270 Hb_001860_030 Hb_001860_030 Hb_000062_270--Hb_001860_030 Hb_000170_090 Hb_000170_090 Hb_000062_270--Hb_000170_090 Hb_000258_110 Hb_000258_110 Hb_000062_270--Hb_000258_110 Hb_013399_020 Hb_013399_020 Hb_000062_270--Hb_013399_020 Hb_004668_090 Hb_004668_090 Hb_000062_270--Hb_004668_090 Hb_004586_220 Hb_004586_220 Hb_000062_270--Hb_004586_220 Hb_028512_020 Hb_028512_020 Hb_001860_030--Hb_028512_020 Hb_001860_030--Hb_013399_020 Hb_000981_030 Hb_000981_030 Hb_001860_030--Hb_000981_030 Hb_004324_130 Hb_004324_130 Hb_001860_030--Hb_004324_130 Hb_001635_090 Hb_001635_090 Hb_001860_030--Hb_001635_090 Hb_105328_020 Hb_105328_020 Hb_000170_090--Hb_105328_020 Hb_001377_310 Hb_001377_310 Hb_000170_090--Hb_001377_310 Hb_000170_090--Hb_004586_220 Hb_000170_090--Hb_013399_020 Hb_000976_140 Hb_000976_140 Hb_000170_090--Hb_000976_140 Hb_000345_160 Hb_000345_160 Hb_000170_090--Hb_000345_160 Hb_001141_310 Hb_001141_310 Hb_000258_110--Hb_001141_310 Hb_000836_460 Hb_000836_460 Hb_000258_110--Hb_000836_460 Hb_086063_020 Hb_086063_020 Hb_000258_110--Hb_086063_020 Hb_000238_030 Hb_000238_030 Hb_000258_110--Hb_000238_030 Hb_000215_300 Hb_000215_300 Hb_000258_110--Hb_000215_300 Hb_004037_020 Hb_004037_020 Hb_000258_110--Hb_004037_020 Hb_000923_010 Hb_000923_010 Hb_013399_020--Hb_000923_010 Hb_013399_020--Hb_105328_020 Hb_000441_220 Hb_000441_220 Hb_013399_020--Hb_000441_220 Hb_003683_020 Hb_003683_020 Hb_013399_020--Hb_003683_020 Hb_093458_040 Hb_093458_040 Hb_013399_020--Hb_093458_040 Hb_002968_080 Hb_002968_080 Hb_004668_090--Hb_002968_080 Hb_179306_020 Hb_179306_020 Hb_004668_090--Hb_179306_020 Hb_005663_110 Hb_005663_110 Hb_004668_090--Hb_005663_110 Hb_001662_100 Hb_001662_100 Hb_004668_090--Hb_001662_100 Hb_000111_320 Hb_000111_320 Hb_004668_090--Hb_000111_320 Hb_020378_030 Hb_020378_030 Hb_004586_220--Hb_020378_030 Hb_001814_030 Hb_001814_030 Hb_004586_220--Hb_001814_030 Hb_000537_050 Hb_000537_050 Hb_004586_220--Hb_000537_050 Hb_000138_100 Hb_000138_100 Hb_004586_220--Hb_000138_100 Hb_004586_220--Hb_000441_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.04152 10.4403 10.0633 13.7406 11.6977 11.677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4293 7.35733 5.95951 14.0895 9.66271

CAGE analysis