Hb_179306_020

Information

Type -
Description -
Location Contig179306: 45473-52888
Sequence    

Annotation

kegg
ID rcu:RCOM_0868170
description hypothetical protein
nr
ID XP_012072633.1
description PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06699 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17338: 45440-45859 , PASA_asmbl_17339: 47411-52307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179306_020 0.0 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
2 Hb_000981_030 0.0649209094 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
3 Hb_002968_080 0.0656137546 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
4 Hb_005663_110 0.0695567387 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
5 Hb_003055_040 0.0738112723 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
6 Hb_011674_020 0.0748939989 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
7 Hb_039946_050 0.07569831 - - catalytic, putative [Ricinus communis]
8 Hb_004668_090 0.0786745675 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
9 Hb_004677_050 0.0798590618 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
10 Hb_000836_460 0.0804623923 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
11 Hb_000984_170 0.081011749 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
12 Hb_000238_030 0.0811193912 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_000110_190 0.0842219168 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
14 Hb_004037_020 0.0849500255 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
15 Hb_002749_060 0.0851122339 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
16 Hb_012286_040 0.0859590974 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
17 Hb_102698_010 0.0873923173 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
18 Hb_002414_050 0.087945528 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
19 Hb_012733_070 0.0886187342 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
20 Hb_004586_220 0.0891087677 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_179306_020 Hb_179306_020 Hb_000981_030 Hb_000981_030 Hb_179306_020--Hb_000981_030 Hb_002968_080 Hb_002968_080 Hb_179306_020--Hb_002968_080 Hb_005663_110 Hb_005663_110 Hb_179306_020--Hb_005663_110 Hb_003055_040 Hb_003055_040 Hb_179306_020--Hb_003055_040 Hb_011674_020 Hb_011674_020 Hb_179306_020--Hb_011674_020 Hb_039946_050 Hb_039946_050 Hb_179306_020--Hb_039946_050 Hb_001500_140 Hb_001500_140 Hb_000981_030--Hb_001500_140 Hb_001860_030 Hb_001860_030 Hb_000981_030--Hb_001860_030 Hb_006520_040 Hb_006520_040 Hb_000981_030--Hb_006520_040 Hb_000981_030--Hb_005663_110 Hb_000170_090 Hb_000170_090 Hb_000981_030--Hb_000170_090 Hb_004668_090 Hb_004668_090 Hb_002968_080--Hb_004668_090 Hb_012733_070 Hb_012733_070 Hb_002968_080--Hb_012733_070 Hb_000110_190 Hb_000110_190 Hb_002968_080--Hb_000110_190 Hb_000138_100 Hb_000138_100 Hb_002968_080--Hb_000138_100 Hb_013726_090 Hb_013726_090 Hb_002968_080--Hb_013726_090 Hb_003544_030 Hb_003544_030 Hb_005663_110--Hb_003544_030 Hb_001434_080 Hb_001434_080 Hb_005663_110--Hb_001434_080 Hb_004677_050 Hb_004677_050 Hb_005663_110--Hb_004677_050 Hb_000984_170 Hb_000984_170 Hb_005663_110--Hb_000984_170 Hb_000327_250 Hb_000327_250 Hb_005663_110--Hb_000327_250 Hb_005663_110--Hb_039946_050 Hb_001258_110 Hb_001258_110 Hb_003055_040--Hb_001258_110 Hb_007137_050 Hb_007137_050 Hb_003055_040--Hb_007137_050 Hb_000836_550 Hb_000836_550 Hb_003055_040--Hb_000836_550 Hb_004450_070 Hb_004450_070 Hb_003055_040--Hb_004450_070 Hb_001500_100 Hb_001500_100 Hb_003055_040--Hb_001500_100 Hb_011674_020--Hb_013726_090 Hb_001571_050 Hb_001571_050 Hb_011674_020--Hb_001571_050 Hb_007380_060 Hb_007380_060 Hb_011674_020--Hb_007380_060 Hb_000111_320 Hb_000111_320 Hb_011674_020--Hb_000111_320 Hb_001876_050 Hb_001876_050 Hb_011674_020--Hb_001876_050 Hb_001999_310 Hb_001999_310 Hb_011674_020--Hb_001999_310 Hb_041327_010 Hb_041327_010 Hb_039946_050--Hb_041327_010 Hb_000099_030 Hb_000099_030 Hb_039946_050--Hb_000099_030 Hb_000069_120 Hb_000069_120 Hb_039946_050--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_039946_050--Hb_000537_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.03309 7.83738 6.6216 12.0841 5.48495 9.99368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.77999 4.90708 5.04737 14.486 9.46847

CAGE analysis