Hb_000110_190

Information

Type -
Description -
Location Contig110: 245355-252882
Sequence    

Annotation

kegg
ID cit:102628650
description serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like
nr
ID KJB80118.1
description hypothetical protein B456_013G081300 [Gossypium raimondii]
swissprot
ID Q38950
description Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2
trembl
ID A0A0D2TXG1
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G081300 PE=4 SV=1
Gene Ontology
ID GO:0005829
description serine threonine-protein phosphatase 2a 65 kda regulatory subunit a beta isoform

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03055: 245346-252858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_190 0.0 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
2 Hb_000872_010 0.0560747982 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
3 Hb_002968_080 0.0706066272 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
4 Hb_001862_140 0.0712983923 - - natural resistance-associated macrophage protein, putative [Ricinus communis]
5 Hb_000592_030 0.0733508099 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
6 Hb_002391_290 0.0762114721 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
7 Hb_056691_060 0.0780593832 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
8 Hb_011674_020 0.0799751291 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
9 Hb_001440_030 0.0804039255 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
10 Hb_008484_060 0.0807726502 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
11 Hb_000022_020 0.082374148 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
12 Hb_010174_040 0.0836738497 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
13 Hb_179306_020 0.0842219168 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
14 Hb_000053_040 0.0849013315 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
15 Hb_007638_030 0.0849108551 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
16 Hb_000429_150 0.0853381297 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
17 Hb_003683_020 0.0858040813 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_000159_090 0.0865694917 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
19 Hb_013726_090 0.0866797966 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
20 Hb_002414_050 0.0866944602 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]

Gene co-expression network

sample Hb_000110_190 Hb_000110_190 Hb_000872_010 Hb_000872_010 Hb_000110_190--Hb_000872_010 Hb_002968_080 Hb_002968_080 Hb_000110_190--Hb_002968_080 Hb_001862_140 Hb_001862_140 Hb_000110_190--Hb_001862_140 Hb_000592_030 Hb_000592_030 Hb_000110_190--Hb_000592_030 Hb_002391_290 Hb_002391_290 Hb_000110_190--Hb_002391_290 Hb_056691_060 Hb_056691_060 Hb_000110_190--Hb_056691_060 Hb_001440_030 Hb_001440_030 Hb_000872_010--Hb_001440_030 Hb_000872_010--Hb_000592_030 Hb_000872_010--Hb_056691_060 Hb_000053_040 Hb_000053_040 Hb_000872_010--Hb_000053_040 Hb_001876_010 Hb_001876_010 Hb_000872_010--Hb_001876_010 Hb_004668_090 Hb_004668_090 Hb_002968_080--Hb_004668_090 Hb_012733_070 Hb_012733_070 Hb_002968_080--Hb_012733_070 Hb_179306_020 Hb_179306_020 Hb_002968_080--Hb_179306_020 Hb_000138_100 Hb_000138_100 Hb_002968_080--Hb_000138_100 Hb_013726_090 Hb_013726_090 Hb_002968_080--Hb_013726_090 Hb_001862_140--Hb_002391_290 Hb_000004_030 Hb_000004_030 Hb_001862_140--Hb_000004_030 Hb_001677_080 Hb_001677_080 Hb_001862_140--Hb_001677_080 Hb_000990_090 Hb_000990_090 Hb_001862_140--Hb_000990_090 Hb_012340_070 Hb_012340_070 Hb_001862_140--Hb_012340_070 Hb_000613_050 Hb_000613_050 Hb_000592_030--Hb_000613_050 Hb_020378_030 Hb_020378_030 Hb_000592_030--Hb_020378_030 Hb_002815_030 Hb_002815_030 Hb_000592_030--Hb_002815_030 Hb_000537_050 Hb_000537_050 Hb_000592_030--Hb_000537_050 Hb_001343_040 Hb_001343_040 Hb_000592_030--Hb_001343_040 Hb_001473_180 Hb_001473_180 Hb_000592_030--Hb_001473_180 Hb_002391_290--Hb_000990_090 Hb_002391_290--Hb_000004_030 Hb_000345_360 Hb_000345_360 Hb_002391_290--Hb_000345_360 Hb_002391_290--Hb_001677_080 Hb_012760_100 Hb_012760_100 Hb_056691_060--Hb_012760_100 Hb_056691_060--Hb_000053_040 Hb_001449_040 Hb_001449_040 Hb_056691_060--Hb_001449_040 Hb_003734_010 Hb_003734_010 Hb_056691_060--Hb_003734_010 Hb_000830_030 Hb_000830_030 Hb_056691_060--Hb_000830_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4544 20.0351 20.3524 39.3674 30.2696 42.9466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.1743 15.7345 24.8984 46.1106 35.2675

CAGE analysis