Hb_000872_010

Information

Type -
Description -
Location Contig872: 19380-25043
Sequence    

Annotation

kegg
ID rcu:RCOM_1174270
description ubiquitin conjugating enzyme, putative (EC:6.3.2.19)
nr
ID XP_012088280.1
description PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
swissprot
ID Q8GY87
description Probable ubiquitin-conjugating enzyme E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2
trembl
ID A0A067JVW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25782 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61169: 19409-25124
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000872_010 0.0 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
2 Hb_000110_190 0.0560747982 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
3 Hb_001440_030 0.0665685765 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
4 Hb_000592_030 0.0668355019 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
5 Hb_056691_060 0.0682526364 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
6 Hb_000053_040 0.0711551345 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
7 Hb_001876_010 0.0720581186 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
8 Hb_009296_040 0.0729766223 - - hypothetical protein L484_007435 [Morus notabilis]
9 Hb_000230_260 0.0778390644 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
10 Hb_010142_020 0.0788118182 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003994_150 0.0796120688 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 [Jatropha curcas]
12 Hb_000031_110 0.0799546794 - - Coatomer, beta subunit isoform 1 [Theobroma cacao]
13 Hb_000613_050 0.0800283046 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
14 Hb_000069_120 0.0813743377 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
15 Hb_000466_140 0.0814272283 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
16 Hb_000028_390 0.0819387404 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
17 Hb_004567_090 0.0830230738 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
18 Hb_000069_210 0.0835143828 - - PREDICTED: exportin-2 [Jatropha curcas]
19 Hb_001449_040 0.084058788 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
20 Hb_000254_090 0.0843416862 - - PREDICTED: la protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000872_010 Hb_000872_010 Hb_000110_190 Hb_000110_190 Hb_000872_010--Hb_000110_190 Hb_001440_030 Hb_001440_030 Hb_000872_010--Hb_001440_030 Hb_000592_030 Hb_000592_030 Hb_000872_010--Hb_000592_030 Hb_056691_060 Hb_056691_060 Hb_000872_010--Hb_056691_060 Hb_000053_040 Hb_000053_040 Hb_000872_010--Hb_000053_040 Hb_001876_010 Hb_001876_010 Hb_000872_010--Hb_001876_010 Hb_002968_080 Hb_002968_080 Hb_000110_190--Hb_002968_080 Hb_001862_140 Hb_001862_140 Hb_000110_190--Hb_001862_140 Hb_000110_190--Hb_000592_030 Hb_002391_290 Hb_002391_290 Hb_000110_190--Hb_002391_290 Hb_000110_190--Hb_056691_060 Hb_000066_170 Hb_000066_170 Hb_001440_030--Hb_000066_170 Hb_000261_480 Hb_000261_480 Hb_001440_030--Hb_000261_480 Hb_000352_340 Hb_000352_340 Hb_001440_030--Hb_000352_340 Hb_001440_030--Hb_001876_010 Hb_009296_040 Hb_009296_040 Hb_001440_030--Hb_009296_040 Hb_000613_050 Hb_000613_050 Hb_000592_030--Hb_000613_050 Hb_020378_030 Hb_020378_030 Hb_000592_030--Hb_020378_030 Hb_002815_030 Hb_002815_030 Hb_000592_030--Hb_002815_030 Hb_000537_050 Hb_000537_050 Hb_000592_030--Hb_000537_050 Hb_001343_040 Hb_001343_040 Hb_000592_030--Hb_001343_040 Hb_001473_180 Hb_001473_180 Hb_000592_030--Hb_001473_180 Hb_012760_100 Hb_012760_100 Hb_056691_060--Hb_012760_100 Hb_056691_060--Hb_000053_040 Hb_001449_040 Hb_001449_040 Hb_056691_060--Hb_001449_040 Hb_003734_010 Hb_003734_010 Hb_056691_060--Hb_003734_010 Hb_000830_030 Hb_000830_030 Hb_056691_060--Hb_000830_030 Hb_002600_150 Hb_002600_150 Hb_000053_040--Hb_002600_150 Hb_000138_100 Hb_000138_100 Hb_000053_040--Hb_000138_100 Hb_001417_030 Hb_001417_030 Hb_000053_040--Hb_001417_030 Hb_000011_060 Hb_000011_060 Hb_000053_040--Hb_000011_060 Hb_000053_040--Hb_003734_010 Hb_001876_010--Hb_000011_060 Hb_002908_050 Hb_002908_050 Hb_001876_010--Hb_002908_050 Hb_000189_550 Hb_000189_550 Hb_001876_010--Hb_000189_550 Hb_000069_210 Hb_000069_210 Hb_001876_010--Hb_000069_210 Hb_000028_390 Hb_000028_390 Hb_001876_010--Hb_000028_390 Hb_000984_170 Hb_000984_170 Hb_001876_010--Hb_000984_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.3004 8.25417 6.37115 14.8431 13.1974 14.6384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.31022 7.9098 12.0661 19.4371 14.7128

CAGE analysis