Hb_001417_030

Information

Type -
Description -
Location Contig1417: 44399-53909
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01980g
description hypothetical protein
nr
ID XP_012075094.1
description PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
swissprot
ID Q8RY59
description Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana GN=RCD1 PE=1 SV=1
trembl
ID A0A067KGT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10829 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11190: 44423-53828 , PASA_asmbl_11192: 49555-49656
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001417_030 0.0 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
2 Hb_000111_290 0.0448225607 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
3 Hb_003913_070 0.0569173993 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
4 Hb_000792_010 0.0599468906 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
5 Hb_002518_260 0.0612195641 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
6 Hb_003411_040 0.0620738108 - - unnamed protein product [Coffea canephora]
7 Hb_000614_240 0.0638673624 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
8 Hb_001999_310 0.0639343176 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
9 Hb_000406_200 0.0646268112 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
10 Hb_000053_040 0.0659431178 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
11 Hb_005582_040 0.0663725199 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
12 Hb_004567_090 0.0673451293 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
13 Hb_001157_240 0.0679437003 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
14 Hb_011063_050 0.0681702354 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
15 Hb_000258_160 0.0682602641 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002456_010 0.0696002834 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
17 Hb_001008_120 0.070011986 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
18 Hb_009270_020 0.0700164119 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
19 Hb_010142_020 0.0715349341 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000340_530 0.0721218259 - - hypothetical protein VITISV_016664 [Vitis vinifera]

Gene co-expression network

sample Hb_001417_030 Hb_001417_030 Hb_000111_290 Hb_000111_290 Hb_001417_030--Hb_000111_290 Hb_003913_070 Hb_003913_070 Hb_001417_030--Hb_003913_070 Hb_000792_010 Hb_000792_010 Hb_001417_030--Hb_000792_010 Hb_002518_260 Hb_002518_260 Hb_001417_030--Hb_002518_260 Hb_003411_040 Hb_003411_040 Hb_001417_030--Hb_003411_040 Hb_000614_240 Hb_000614_240 Hb_001417_030--Hb_000614_240 Hb_004324_130 Hb_004324_130 Hb_000111_290--Hb_004324_130 Hb_002456_010 Hb_002456_010 Hb_000111_290--Hb_002456_010 Hb_000111_290--Hb_003913_070 Hb_000111_290--Hb_000614_240 Hb_001999_310 Hb_001999_310 Hb_000111_290--Hb_001999_310 Hb_003734_010 Hb_003734_010 Hb_003913_070--Hb_003734_010 Hb_003913_070--Hb_001999_310 Hb_001814_030 Hb_001814_030 Hb_003913_070--Hb_001814_030 Hb_003913_070--Hb_003411_040 Hb_000329_710 Hb_000329_710 Hb_000792_010--Hb_000329_710 Hb_000792_010--Hb_002518_260 Hb_000028_480 Hb_000028_480 Hb_000792_010--Hb_000028_480 Hb_000792_010--Hb_003411_040 Hb_001004_060 Hb_001004_060 Hb_000792_010--Hb_001004_060 Hb_011386_010 Hb_011386_010 Hb_000792_010--Hb_011386_010 Hb_000041_110 Hb_000041_110 Hb_002518_260--Hb_000041_110 Hb_002518_260--Hb_000028_480 Hb_009486_140 Hb_009486_140 Hb_002518_260--Hb_009486_140 Hb_002518_260--Hb_011386_010 Hb_002518_260--Hb_000329_710 Hb_003411_040--Hb_001814_030 Hb_000592_030 Hb_000592_030 Hb_003411_040--Hb_000592_030 Hb_004567_090 Hb_004567_090 Hb_003411_040--Hb_004567_090 Hb_003411_040--Hb_000111_290 Hb_000614_240--Hb_001999_310 Hb_010142_020 Hb_010142_020 Hb_000614_240--Hb_010142_020 Hb_011016_050 Hb_011016_050 Hb_000614_240--Hb_011016_050 Hb_000011_060 Hb_000011_060 Hb_000614_240--Hb_000011_060 Hb_000614_240--Hb_002456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6019 27.9255 15.1759 24.0596 22.4293 23.0444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2258 24.1805 25.6157 35.2325 33.4479

CAGE analysis