Hb_003734_010

Information

Type -
Description -
Location Contig3734: 9800-20689
Sequence    

Annotation

kegg
ID rcu:RCOM_1254650
description meiotic recombination repair protein, putative
nr
ID XP_012070662.1
description PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
swissprot
ID Q9XGM2
description Double-strand break repair protein MRE11 OS=Arabidopsis thaliana GN=MRE11 PE=1 SV=1
trembl
ID B9SIE0
description Meiotic recombination repair protein, putative OS=Ricinus communis GN=RCOM_1254650 PE=3 SV=1
Gene Ontology
ID GO:0000791
description double-strand break repair protein mre11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38166: 10526-14297 , PASA_asmbl_38167: 14301-15019 , PASA_asmbl_38168: 15349-16788 , PASA_asmbl_38169: 18261-19397 , PASA_asmbl_38170: 19473-20873
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003734_010 0.0 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
2 Hb_004327_040 0.0468586292 - - PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]
3 Hb_003913_070 0.0512291645 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
4 Hb_001814_030 0.0566257913 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
5 Hb_009976_020 0.0567953495 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
6 Hb_003517_040 0.0576722427 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
7 Hb_012760_100 0.0595759808 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
8 Hb_008484_060 0.0619060754 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
9 Hb_004586_220 0.0633960204 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
10 Hb_000227_220 0.0645930882 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
11 Hb_007426_110 0.0650542853 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
12 Hb_009270_020 0.0654781084 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
13 Hb_011231_020 0.0659699413 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
14 Hb_001925_060 0.066448464 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
15 Hb_056691_060 0.0677708166 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
16 Hb_000053_040 0.0697162079 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
17 Hb_000406_200 0.0706481479 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
18 Hb_001862_130 0.0721518329 - - Protein FRIGIDA, putative [Ricinus communis]
19 Hb_001343_040 0.0724550785 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
20 Hb_012733_030 0.072476388 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]

Gene co-expression network

sample Hb_003734_010 Hb_003734_010 Hb_004327_040 Hb_004327_040 Hb_003734_010--Hb_004327_040 Hb_003913_070 Hb_003913_070 Hb_003734_010--Hb_003913_070 Hb_001814_030 Hb_001814_030 Hb_003734_010--Hb_001814_030 Hb_009976_020 Hb_009976_020 Hb_003734_010--Hb_009976_020 Hb_003517_040 Hb_003517_040 Hb_003734_010--Hb_003517_040 Hb_012760_100 Hb_012760_100 Hb_003734_010--Hb_012760_100 Hb_004327_040--Hb_012760_100 Hb_000189_320 Hb_000189_320 Hb_004327_040--Hb_000189_320 Hb_000025_710 Hb_000025_710 Hb_004327_040--Hb_000025_710 Hb_011174_020 Hb_011174_020 Hb_004327_040--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_004327_040--Hb_001925_060 Hb_000111_290 Hb_000111_290 Hb_003913_070--Hb_000111_290 Hb_001417_030 Hb_001417_030 Hb_003913_070--Hb_001417_030 Hb_001999_310 Hb_001999_310 Hb_003913_070--Hb_001999_310 Hb_003913_070--Hb_001814_030 Hb_003411_040 Hb_003411_040 Hb_003913_070--Hb_003411_040 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_002205_250 Hb_002205_250 Hb_001814_030--Hb_002205_250 Hb_000614_210 Hb_000614_210 Hb_001814_030--Hb_000614_210 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_001814_030--Hb_159558_010 Hb_020378_030 Hb_020378_030 Hb_001814_030--Hb_020378_030 Hb_011231_020 Hb_011231_020 Hb_009976_020--Hb_011231_020 Hb_009976_020--Hb_012760_100 Hb_009976_020--Hb_001814_030 Hb_000227_220 Hb_000227_220 Hb_009976_020--Hb_000227_220 Hb_001062_010 Hb_001062_010 Hb_009976_020--Hb_001062_010 Hb_000976_140 Hb_000976_140 Hb_003517_040--Hb_000976_140 Hb_001789_110 Hb_001789_110 Hb_003517_040--Hb_001789_110 Hb_000138_100 Hb_000138_100 Hb_003517_040--Hb_000138_100 Hb_000441_090 Hb_000441_090 Hb_003517_040--Hb_000441_090 Hb_002263_020 Hb_002263_020 Hb_003517_040--Hb_002263_020 Hb_004182_050 Hb_004182_050 Hb_012760_100--Hb_004182_050 Hb_056691_060 Hb_056691_060 Hb_012760_100--Hb_056691_060 Hb_007994_010 Hb_007994_010 Hb_012760_100--Hb_007994_010 Hb_005215_010 Hb_005215_010 Hb_012760_100--Hb_005215_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.36041 4.72713 3.30069 3.89287 3.73255 5.3679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.38489 3.39634 2.79333 5.97735 5.74985

CAGE analysis