Hb_011231_020

Information

Type -
Description -
Location Contig11231: 9889-19714
Sequence    

Annotation

kegg
ID rcu:RCOM_0888110
description hypothetical protein
nr
ID XP_012074676.1
description PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
swissprot
ID Q8IZL8
description Proline-, glutamic acid- and leucine-rich protein 1 OS=Homo sapiens GN=PELP1 PE=1 SV=2
trembl
ID A0A067KU49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10426 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03781: 9918-19658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011231_020 0.0 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
2 Hb_001655_030 0.0484872191 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
3 Hb_009976_020 0.0534874735 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
4 Hb_001814_030 0.0609781316 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
5 Hb_002890_130 0.0630428579 - - tip120, putative [Ricinus communis]
6 Hb_003734_010 0.0659699413 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
7 Hb_008484_060 0.0661883598 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
8 Hb_012760_100 0.0666525955 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
9 Hb_007426_110 0.0677388913 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
10 Hb_004586_220 0.0680623932 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
11 Hb_002411_110 0.0689577767 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
12 Hb_000227_220 0.0693535727 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
13 Hb_000252_050 0.0708958342 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
14 Hb_012286_040 0.0719182551 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
15 Hb_102698_010 0.0728352736 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
16 Hb_000317_100 0.0729016638 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
17 Hb_000890_060 0.0732202369 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
18 Hb_000563_130 0.0734096613 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
19 Hb_005402_040 0.0738098981 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
20 Hb_005215_010 0.0748632458 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_011231_020 Hb_011231_020 Hb_001655_030 Hb_001655_030 Hb_011231_020--Hb_001655_030 Hb_009976_020 Hb_009976_020 Hb_011231_020--Hb_009976_020 Hb_001814_030 Hb_001814_030 Hb_011231_020--Hb_001814_030 Hb_002890_130 Hb_002890_130 Hb_011231_020--Hb_002890_130 Hb_003734_010 Hb_003734_010 Hb_011231_020--Hb_003734_010 Hb_008484_060 Hb_008484_060 Hb_011231_020--Hb_008484_060 Hb_006501_090 Hb_006501_090 Hb_001655_030--Hb_006501_090 Hb_007426_110 Hb_007426_110 Hb_001655_030--Hb_007426_110 Hb_001655_030--Hb_001814_030 Hb_003645_060 Hb_003645_060 Hb_001655_030--Hb_003645_060 Hb_000890_060 Hb_000890_060 Hb_001655_030--Hb_000890_060 Hb_012760_100 Hb_012760_100 Hb_009976_020--Hb_012760_100 Hb_009976_020--Hb_001814_030 Hb_000227_220 Hb_000227_220 Hb_009976_020--Hb_000227_220 Hb_009976_020--Hb_003734_010 Hb_001062_010 Hb_001062_010 Hb_009976_020--Hb_001062_010 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_002205_250 Hb_002205_250 Hb_001814_030--Hb_002205_250 Hb_000614_210 Hb_000614_210 Hb_001814_030--Hb_000614_210 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_001814_030--Hb_159558_010 Hb_020378_030 Hb_020378_030 Hb_001814_030--Hb_020378_030 Hb_011819_020 Hb_011819_020 Hb_002890_130--Hb_011819_020 Hb_002411_110 Hb_002411_110 Hb_002890_130--Hb_002411_110 Hb_000317_100 Hb_000317_100 Hb_002890_130--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_002890_130--Hb_005215_010 Hb_000003_100 Hb_000003_100 Hb_002890_130--Hb_000003_100 Hb_000261_480 Hb_000261_480 Hb_002890_130--Hb_000261_480 Hb_004327_040 Hb_004327_040 Hb_003734_010--Hb_004327_040 Hb_003913_070 Hb_003913_070 Hb_003734_010--Hb_003913_070 Hb_003734_010--Hb_001814_030 Hb_003517_040 Hb_003517_040 Hb_003734_010--Hb_003517_040 Hb_003734_010--Hb_012760_100 Hb_008484_060--Hb_009976_020 Hb_008484_060--Hb_003734_010 Hb_000830_030 Hb_000830_030 Hb_008484_060--Hb_000830_030 Hb_008484_060--Hb_012760_100 Hb_056691_060 Hb_056691_060 Hb_008484_060--Hb_056691_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.8681 9.77913 9.53641 10.1827 8.76723 12.0338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.69913 6.7113 6.95313 13.056 12.2078

CAGE analysis