Hb_012760_100

Information

Type -
Description -
Location Contig12760: 63093-70171
Sequence    

Annotation

kegg
ID rcu:RCOM_0310730
description Pre-rRNA-processing protein ESF1, putative
nr
ID XP_002534037.1
description Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
swissprot
ID O74828
description Pre-rRNA-processing protein esf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=esf1 PE=1 SV=1
trembl
ID B9T718
description Pre-rRNA-processing protein ESF1, putative OS=Ricinus communis GN=RCOM_0310730 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pre-rrna-processing protein esf1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08424: 63133-69826 , PASA_asmbl_08425: 63110-69797 , PASA_asmbl_08426: 69998-70135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012760_100 0.0 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
2 Hb_009976_020 0.0536016518 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
3 Hb_004182_050 0.0560677876 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
4 Hb_056691_060 0.0570756469 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
5 Hb_007994_010 0.0586281599 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
6 Hb_003734_010 0.0595759808 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
7 Hb_005215_010 0.061122011 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
8 Hb_008484_060 0.0637436335 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
9 Hb_000227_220 0.0650165845 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
10 Hb_001814_030 0.0651123039 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
11 Hb_004327_040 0.0655592606 - - PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]
12 Hb_011231_020 0.0666525955 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
13 Hb_001062_010 0.0687079377 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
14 Hb_004143_160 0.0696192944 - - SAB, putative [Ricinus communis]
15 Hb_000441_090 0.0697620556 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
16 Hb_000317_100 0.0718167188 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
17 Hb_005402_040 0.0721715143 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
18 Hb_001343_040 0.0737014566 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
19 Hb_003517_040 0.0737277882 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
20 Hb_000252_050 0.0747477464 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]

Gene co-expression network

sample Hb_012760_100 Hb_012760_100 Hb_009976_020 Hb_009976_020 Hb_012760_100--Hb_009976_020 Hb_004182_050 Hb_004182_050 Hb_012760_100--Hb_004182_050 Hb_056691_060 Hb_056691_060 Hb_012760_100--Hb_056691_060 Hb_007994_010 Hb_007994_010 Hb_012760_100--Hb_007994_010 Hb_003734_010 Hb_003734_010 Hb_012760_100--Hb_003734_010 Hb_005215_010 Hb_005215_010 Hb_012760_100--Hb_005215_010 Hb_011231_020 Hb_011231_020 Hb_009976_020--Hb_011231_020 Hb_001814_030 Hb_001814_030 Hb_009976_020--Hb_001814_030 Hb_000227_220 Hb_000227_220 Hb_009976_020--Hb_000227_220 Hb_009976_020--Hb_003734_010 Hb_001062_010 Hb_001062_010 Hb_009976_020--Hb_001062_010 Hb_004182_050--Hb_001814_030 Hb_012395_140 Hb_012395_140 Hb_004182_050--Hb_012395_140 Hb_001550_060 Hb_001550_060 Hb_004182_050--Hb_001550_060 Hb_000174_270 Hb_000174_270 Hb_004182_050--Hb_000174_270 Hb_000412_010 Hb_000412_010 Hb_004182_050--Hb_000412_010 Hb_000053_040 Hb_000053_040 Hb_056691_060--Hb_000053_040 Hb_001449_040 Hb_001449_040 Hb_056691_060--Hb_001449_040 Hb_056691_060--Hb_003734_010 Hb_000872_010 Hb_000872_010 Hb_056691_060--Hb_000872_010 Hb_000830_030 Hb_000830_030 Hb_056691_060--Hb_000830_030 Hb_135572_010 Hb_135572_010 Hb_007994_010--Hb_135572_010 Hb_004143_160 Hb_004143_160 Hb_007994_010--Hb_004143_160 Hb_001381_050 Hb_001381_050 Hb_007994_010--Hb_001381_050 Hb_000809_230 Hb_000809_230 Hb_007994_010--Hb_000809_230 Hb_001188_020 Hb_001188_020 Hb_007994_010--Hb_001188_020 Hb_004327_040 Hb_004327_040 Hb_003734_010--Hb_004327_040 Hb_003913_070 Hb_003913_070 Hb_003734_010--Hb_003913_070 Hb_003734_010--Hb_001814_030 Hb_003517_040 Hb_003517_040 Hb_003734_010--Hb_003517_040 Hb_000317_100 Hb_000317_100 Hb_005215_010--Hb_000317_100 Hb_002890_130 Hb_002890_130 Hb_005215_010--Hb_002890_130 Hb_011819_020 Hb_011819_020 Hb_005215_010--Hb_011819_020 Hb_000494_050 Hb_000494_050 Hb_005215_010--Hb_000494_050 Hb_003040_050 Hb_003040_050 Hb_005215_010--Hb_003040_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4274 20.9486 13.7767 20.621 22.0996 24.7316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5112 12.4461 13.0821 24.0044 30.1178

CAGE analysis