Hb_004327_040

Information

Type -
Description -
Location Contig4327: 58605-85891
Sequence    

Annotation

kegg
ID rcu:RCOM_1604230
description hypothetical protein
nr
ID XP_012074715.1
description PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]
swissprot
ID Q54BW6
description Tetratricopeptide repeat protein 27 homolog OS=Dictyostelium discoideum GN=ttc27 PE=3 SV=1
trembl
ID A0A067KHP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10493 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42365: 58708-58989 , PASA_asmbl_42366: 59155-59656 , PASA_asmbl_42367: 59678-73858 , PASA_asmbl_42368: 77444-86021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004327_040 0.0 - - PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]
2 Hb_003734_010 0.0468586292 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
3 Hb_012760_100 0.0655592606 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
4 Hb_000189_320 0.0682626788 - - PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Jatropha curcas]
5 Hb_000025_710 0.0739478441 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
6 Hb_011174_020 0.0765430819 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
7 Hb_001925_060 0.0767521744 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
8 Hb_009976_020 0.0784630553 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
9 Hb_001442_060 0.0797699902 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
10 Hb_000749_090 0.0807967019 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_003913_070 0.080914112 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
12 Hb_003943_010 0.0812800635 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000227_220 0.0821757425 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
14 Hb_000568_050 0.0830457011 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
15 Hb_001188_020 0.083106034 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
16 Hb_005402_040 0.0831080844 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
17 Hb_003517_040 0.0833740661 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
18 Hb_007994_010 0.0835697568 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
19 Hb_004143_160 0.0835738155 - - SAB, putative [Ricinus communis]
20 Hb_056691_060 0.0839448772 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004327_040 Hb_004327_040 Hb_003734_010 Hb_003734_010 Hb_004327_040--Hb_003734_010 Hb_012760_100 Hb_012760_100 Hb_004327_040--Hb_012760_100 Hb_000189_320 Hb_000189_320 Hb_004327_040--Hb_000189_320 Hb_000025_710 Hb_000025_710 Hb_004327_040--Hb_000025_710 Hb_011174_020 Hb_011174_020 Hb_004327_040--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_004327_040--Hb_001925_060 Hb_003913_070 Hb_003913_070 Hb_003734_010--Hb_003913_070 Hb_001814_030 Hb_001814_030 Hb_003734_010--Hb_001814_030 Hb_009976_020 Hb_009976_020 Hb_003734_010--Hb_009976_020 Hb_003517_040 Hb_003517_040 Hb_003734_010--Hb_003517_040 Hb_003734_010--Hb_012760_100 Hb_012760_100--Hb_009976_020 Hb_004182_050 Hb_004182_050 Hb_012760_100--Hb_004182_050 Hb_056691_060 Hb_056691_060 Hb_012760_100--Hb_056691_060 Hb_007994_010 Hb_007994_010 Hb_012760_100--Hb_007994_010 Hb_005215_010 Hb_005215_010 Hb_012760_100--Hb_005215_010 Hb_003117_030 Hb_003117_030 Hb_000189_320--Hb_003117_030 Hb_000189_320--Hb_003734_010 Hb_008387_020 Hb_008387_020 Hb_000189_320--Hb_008387_020 Hb_000011_270 Hb_000011_270 Hb_000189_320--Hb_000011_270 Hb_000568_050 Hb_000568_050 Hb_000189_320--Hb_000568_050 Hb_188063_010 Hb_188063_010 Hb_000025_710--Hb_188063_010 Hb_005402_040 Hb_005402_040 Hb_000025_710--Hb_005402_040 Hb_001191_120 Hb_001191_120 Hb_000025_710--Hb_001191_120 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_002333_050 Hb_002333_050 Hb_000025_710--Hb_002333_050 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_012244_020 Hb_012244_020 Hb_011174_020--Hb_012244_020 Hb_003040_050 Hb_003040_050 Hb_011174_020--Hb_003040_050 Hb_011174_020--Hb_000568_050 Hb_002805_210 Hb_002805_210 Hb_011174_020--Hb_002805_210 Hb_011174_020--Hb_001925_060 Hb_017469_110 Hb_017469_110 Hb_011174_020--Hb_017469_110 Hb_002411_110 Hb_002411_110 Hb_001925_060--Hb_002411_110 Hb_001925_060--Hb_003040_050 Hb_007413_010 Hb_007413_010 Hb_001925_060--Hb_007413_010 Hb_000317_100 Hb_000317_100 Hb_001925_060--Hb_000317_100 Hb_000795_040 Hb_000795_040 Hb_001925_060--Hb_000795_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.33741 4.95291 2.57327 3.52255 3.27717 4.8593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.83466 2.70274 1.91802 5.59968 5.8387

CAGE analysis