Hb_005542_140

Information

Type -
Description -
Location Contig5542: 113149-117336
Sequence    

Annotation

kegg
ID pmum:103332895
description U-box domain-containing protein 62-like
nr
ID XP_012091141.1
description PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
swissprot
ID Q6DBN5
description U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62 PE=2 SV=1
trembl
ID A0A067JCW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03318 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 62-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48440: 116331-116866 , PASA_asmbl_48441: 113454-117220
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005542_140 0.0 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
2 Hb_023226_080 0.0503647925 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
3 Hb_159558_010 0.0509980571 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
4 Hb_007426_060 0.0587571999 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
5 Hb_000862_040 0.0595311473 - - ara4-interacting protein, putative [Ricinus communis]
6 Hb_005568_040 0.0597516877 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
7 Hb_001668_010 0.0617038134 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
8 Hb_000176_100 0.0624354369 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
9 Hb_004586_290 0.0625122893 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
10 Hb_000614_210 0.0637006551 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
11 Hb_001673_050 0.0647005185 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
12 Hb_000025_710 0.0650181566 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
13 Hb_003835_070 0.0652356448 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
14 Hb_003581_170 0.0656034719 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
15 Hb_029977_040 0.0664196171 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
16 Hb_000099_040 0.0665184271 - - unnamed protein product [Coffea canephora]
17 Hb_000105_040 0.0666634702 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
18 Hb_001628_070 0.0667138923 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_027472_220 0.0675182713 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
20 Hb_000170_150 0.0683619688 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_005542_140 Hb_005542_140 Hb_023226_080 Hb_023226_080 Hb_005542_140--Hb_023226_080 Hb_159558_010 Hb_159558_010 Hb_005542_140--Hb_159558_010 Hb_007426_060 Hb_007426_060 Hb_005542_140--Hb_007426_060 Hb_000862_040 Hb_000862_040 Hb_005542_140--Hb_000862_040 Hb_005568_040 Hb_005568_040 Hb_005542_140--Hb_005568_040 Hb_001668_010 Hb_001668_010 Hb_005542_140--Hb_001668_010 Hb_000176_100 Hb_000176_100 Hb_023226_080--Hb_000176_100 Hb_000069_410 Hb_000069_410 Hb_023226_080--Hb_000069_410 Hb_023226_080--Hb_159558_010 Hb_000012_260 Hb_000012_260 Hb_023226_080--Hb_000012_260 Hb_009615_170 Hb_009615_170 Hb_023226_080--Hb_009615_170 Hb_000614_210 Hb_000614_210 Hb_159558_010--Hb_000614_210 Hb_001814_030 Hb_001814_030 Hb_159558_010--Hb_001814_030 Hb_000174_060 Hb_000174_060 Hb_159558_010--Hb_000174_060 Hb_003206_130 Hb_003206_130 Hb_159558_010--Hb_003206_130 Hb_159558_010--Hb_009615_170 Hb_007818_030 Hb_007818_030 Hb_007426_060--Hb_007818_030 Hb_001534_210 Hb_001534_210 Hb_007426_060--Hb_001534_210 Hb_001673_050 Hb_001673_050 Hb_007426_060--Hb_001673_050 Hb_000099_040 Hb_000099_040 Hb_007426_060--Hb_000099_040 Hb_007426_060--Hb_000176_100 Hb_000940_200 Hb_000940_200 Hb_000862_040--Hb_000940_200 Hb_000059_020 Hb_000059_020 Hb_000862_040--Hb_000059_020 Hb_001935_140 Hb_001935_140 Hb_000862_040--Hb_001935_140 Hb_000862_040--Hb_005568_040 Hb_002325_040 Hb_002325_040 Hb_000862_040--Hb_002325_040 Hb_000479_240 Hb_000479_240 Hb_005568_040--Hb_000479_240 Hb_004645_070 Hb_004645_070 Hb_005568_040--Hb_004645_070 Hb_000331_580 Hb_000331_580 Hb_005568_040--Hb_000331_580 Hb_000008_240 Hb_000008_240 Hb_005568_040--Hb_000008_240 Hb_003912_070 Hb_003912_070 Hb_005568_040--Hb_003912_070 Hb_004586_290 Hb_004586_290 Hb_005568_040--Hb_004586_290 Hb_001668_010--Hb_001673_050 Hb_134362_010 Hb_134362_010 Hb_001668_010--Hb_134362_010 Hb_000635_030 Hb_000635_030 Hb_001668_010--Hb_000635_030 Hb_027472_220 Hb_027472_220 Hb_001668_010--Hb_027472_220 Hb_000011_100 Hb_000011_100 Hb_001668_010--Hb_000011_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.76558 16.4159 7.69801 7.81511 9.51902 9.39973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.91691 6.12462 6.03137 12.4797 9.5376

CAGE analysis