Hb_001935_140

Information

Type -
Description -
Location Contig1935: 103918-123056
Sequence    

Annotation

kegg
ID fve:101308317
description CCR4-NOT transcription complex subunit 1-like
nr
ID KHG27375.1
description CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
swissprot
ID A0JP85
description CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis GN=cnot1 PE=2 SV=1
trembl
ID A0A0B0PQU2
description CCR4-NOT transcription complex subunit 1 OS=Gossypium arboreum GN=F383_13459 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19318: 104993-105258 , PASA_asmbl_19319: 106755-107741 , PASA_asmbl_19320: 120877-121914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001935_140 0.0 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
2 Hb_000105_040 0.0412483516 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
3 Hb_001541_250 0.0633552127 - - PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
4 Hb_007054_040 0.0655680817 - - PREDICTED: protein RST1 [Jatropha curcas]
5 Hb_000862_040 0.0693800791 - - ara4-interacting protein, putative [Ricinus communis]
6 Hb_003581_170 0.07143426 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
7 Hb_005542_140 0.0726375453 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
8 Hb_009028_010 0.0767539799 - - PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
9 Hb_000236_410 0.0798590051 - - Paramyosin, putative [Ricinus communis]
10 Hb_001699_280 0.0803567352 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
11 Hb_000479_240 0.0803896373 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
12 Hb_144744_010 0.0808544722 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
13 Hb_000059_020 0.0816415666 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
14 Hb_002374_290 0.0821409697 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
15 Hb_032808_030 0.0825863671 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
16 Hb_023226_080 0.082796511 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
17 Hb_000631_120 0.0833839053 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
18 Hb_010712_090 0.0835077819 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
19 Hb_000768_180 0.0842441111 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
20 Hb_008948_140 0.0857916068 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]

Gene co-expression network

sample Hb_001935_140 Hb_001935_140 Hb_000105_040 Hb_000105_040 Hb_001935_140--Hb_000105_040 Hb_001541_250 Hb_001541_250 Hb_001935_140--Hb_001541_250 Hb_007054_040 Hb_007054_040 Hb_001935_140--Hb_007054_040 Hb_000862_040 Hb_000862_040 Hb_001935_140--Hb_000862_040 Hb_003581_170 Hb_003581_170 Hb_001935_140--Hb_003581_170 Hb_005542_140 Hb_005542_140 Hb_001935_140--Hb_005542_140 Hb_001699_280 Hb_001699_280 Hb_000105_040--Hb_001699_280 Hb_000105_040--Hb_003581_170 Hb_000105_040--Hb_005542_140 Hb_000069_410 Hb_000069_410 Hb_000105_040--Hb_000069_410 Hb_001951_170 Hb_001951_170 Hb_000105_040--Hb_001951_170 Hb_001541_250--Hb_007054_040 Hb_001862_110 Hb_001862_110 Hb_001541_250--Hb_001862_110 Hb_002374_290 Hb_002374_290 Hb_001541_250--Hb_002374_290 Hb_009028_010 Hb_009028_010 Hb_001541_250--Hb_009028_010 Hb_000809_170 Hb_000809_170 Hb_001541_250--Hb_000809_170 Hb_007054_040--Hb_001862_110 Hb_000373_100 Hb_000373_100 Hb_007054_040--Hb_000373_100 Hb_005389_160 Hb_005389_160 Hb_007054_040--Hb_005389_160 Hb_000169_170 Hb_000169_170 Hb_007054_040--Hb_000169_170 Hb_000940_200 Hb_000940_200 Hb_000862_040--Hb_000940_200 Hb_000862_040--Hb_005542_140 Hb_000059_020 Hb_000059_020 Hb_000862_040--Hb_000059_020 Hb_005568_040 Hb_005568_040 Hb_000862_040--Hb_005568_040 Hb_002325_040 Hb_002325_040 Hb_000862_040--Hb_002325_040 Hb_000176_100 Hb_000176_100 Hb_003581_170--Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_003581_170--Hb_000949_010 Hb_003581_170--Hb_001699_280 Hb_011242_060 Hb_011242_060 Hb_003581_170--Hb_011242_060 Hb_000836_020 Hb_000836_020 Hb_003581_170--Hb_000836_020 Hb_023226_080 Hb_023226_080 Hb_005542_140--Hb_023226_080 Hb_159558_010 Hb_159558_010 Hb_005542_140--Hb_159558_010 Hb_007426_060 Hb_007426_060 Hb_005542_140--Hb_007426_060 Hb_005542_140--Hb_005568_040 Hb_001668_010 Hb_001668_010 Hb_005542_140--Hb_001668_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.78074 15.9236 4.40994 6.72787 7.15203 7.05512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.31276 5.16833 3.19026 9.01148 6.06916

CAGE analysis