Hb_007054_040

Information

Type -
Description -
Location Contig7054: 39853-60721
Sequence    

Annotation

kegg
ID rcu:RCOM_1063970
description hypothetical protein
nr
ID XP_012072379.1
description PREDICTED: protein RST1 [Jatropha curcas]
swissprot
ID Q7XZF5
description Protein RST1 OS=Arabidopsis thaliana GN=RST1 PE=2 SV=2
trembl
ID B9S637
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1063970 PE=4 SV=1
Gene Ontology
ID GO:0006464
description protein rst1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55096: 40046-40761 , PASA_asmbl_55097: 40809-41377 , PASA_asmbl_55098: 42019-43036 , PASA_asmbl_55099: 45080-47591 , PASA_asmbl_55100: 48718-49809 , PASA_asmbl_55102: 50748-51238 , PASA_asmbl_55103: 51281-52765 , PASA_asmbl_55104: 53258-60279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007054_040 0.0 - - PREDICTED: protein RST1 [Jatropha curcas]
2 Hb_001541_250 0.0505996354 - - PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
3 Hb_001862_110 0.0525821252 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
4 Hb_000373_100 0.0614495125 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
5 Hb_001935_140 0.0655680817 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
6 Hb_005389_160 0.0745499844 - - PREDICTED: casein kinase I [Jatropha curcas]
7 Hb_000169_170 0.0754944875 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
8 Hb_000862_040 0.0763360594 - - ara4-interacting protein, putative [Ricinus communis]
9 Hb_000105_040 0.0777609786 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
10 Hb_000059_020 0.0812044473 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
11 Hb_002374_290 0.0814390028 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
12 Hb_000703_200 0.0814537325 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
13 Hb_004785_030 0.0815126431 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
14 Hb_000631_120 0.0828649864 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
15 Hb_005542_140 0.0843333712 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
16 Hb_004586_290 0.0847949745 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
17 Hb_000720_150 0.0849505504 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]
18 Hb_007426_060 0.0854416519 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
19 Hb_009028_010 0.0856351224 - - PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
20 Hb_000363_120 0.0873748725 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]

Gene co-expression network

sample Hb_007054_040 Hb_007054_040 Hb_001541_250 Hb_001541_250 Hb_007054_040--Hb_001541_250 Hb_001862_110 Hb_001862_110 Hb_007054_040--Hb_001862_110 Hb_000373_100 Hb_000373_100 Hb_007054_040--Hb_000373_100 Hb_001935_140 Hb_001935_140 Hb_007054_040--Hb_001935_140 Hb_005389_160 Hb_005389_160 Hb_007054_040--Hb_005389_160 Hb_000169_170 Hb_000169_170 Hb_007054_040--Hb_000169_170 Hb_001541_250--Hb_001862_110 Hb_001541_250--Hb_001935_140 Hb_002374_290 Hb_002374_290 Hb_001541_250--Hb_002374_290 Hb_009028_010 Hb_009028_010 Hb_001541_250--Hb_009028_010 Hb_000809_170 Hb_000809_170 Hb_001541_250--Hb_000809_170 Hb_009486_160 Hb_009486_160 Hb_001862_110--Hb_009486_160 Hb_001488_040 Hb_001488_040 Hb_001862_110--Hb_001488_040 Hb_000926_150 Hb_000926_150 Hb_001862_110--Hb_000926_150 Hb_002812_010 Hb_002812_010 Hb_001862_110--Hb_002812_010 Hb_000373_100--Hb_005389_160 Hb_000347_120 Hb_000347_120 Hb_000373_100--Hb_000347_120 Hb_000703_200 Hb_000703_200 Hb_000373_100--Hb_000703_200 Hb_010417_070 Hb_010417_070 Hb_000373_100--Hb_010417_070 Hb_001545_150 Hb_001545_150 Hb_000373_100--Hb_001545_150 Hb_000105_040 Hb_000105_040 Hb_001935_140--Hb_000105_040 Hb_000862_040 Hb_000862_040 Hb_001935_140--Hb_000862_040 Hb_003581_170 Hb_003581_170 Hb_001935_140--Hb_003581_170 Hb_005542_140 Hb_005542_140 Hb_001935_140--Hb_005542_140 Hb_005389_160--Hb_010417_070 Hb_005389_160--Hb_000347_120 Hb_000363_120 Hb_000363_120 Hb_005389_160--Hb_000363_120 Hb_001104_170 Hb_001104_170 Hb_005389_160--Hb_001104_170 Hb_003398_080 Hb_003398_080 Hb_005389_160--Hb_003398_080 Hb_000009_330 Hb_000009_330 Hb_000169_170--Hb_000009_330 Hb_000169_170--Hb_001541_250 Hb_127599_010 Hb_127599_010 Hb_000169_170--Hb_127599_010 Hb_000169_170--Hb_000862_040 Hb_000169_170--Hb_001862_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50841 8.07548 2.76327 2.74471 2.93569 2.38506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.29981 2.15286 1.79933 4.16636 2.69806

CAGE analysis