Hb_009486_160

Information

Type -
Description -
Location Contig9486: 86676-90003
Sequence    

Annotation

kegg
ID rcu:RCOM_0658580
description caspase, putative
nr
ID XP_012083740.1
description PREDICTED: metacaspase-1 [Jatropha curcas]
swissprot
ID Q7XJE6
description Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1
trembl
ID A0A067K1H5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14664 PE=4 SV=1
Gene Ontology
ID GO:0004197
description metacaspase-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63361: 87023-89905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_160 0.0 - - PREDICTED: metacaspase-1 [Jatropha curcas]
2 Hb_011249_060 0.0694205112 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
3 Hb_002812_010 0.0725312151 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
4 Hb_001862_110 0.0748573414 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
5 Hb_004319_070 0.0788887652 - - hypothetical protein RCOM_0852460 [Ricinus communis]
6 Hb_000363_120 0.079879371 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
7 Hb_004899_040 0.0800249311 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
8 Hb_000699_210 0.0806923001 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
9 Hb_009302_030 0.0813637667 - - hypothetical protein RCOM_1176340 [Ricinus communis]
10 Hb_000094_090 0.0815332666 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
11 Hb_001488_040 0.0819904912 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
12 Hb_004526_010 0.0821962211 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
13 Hb_005834_040 0.0827189684 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
14 Hb_052764_030 0.0856913095 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
15 Hb_002897_050 0.0877253384 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
16 Hb_004319_050 0.0877519197 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
17 Hb_005765_040 0.0887238341 - - transcription elongation factor s-II, putative [Ricinus communis]
18 Hb_000373_230 0.0904399962 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
19 Hb_007054_040 0.090765945 - - PREDICTED: protein RST1 [Jatropha curcas]
20 Hb_001427_150 0.0911670832 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009486_160 Hb_009486_160 Hb_011249_060 Hb_011249_060 Hb_009486_160--Hb_011249_060 Hb_002812_010 Hb_002812_010 Hb_009486_160--Hb_002812_010 Hb_001862_110 Hb_001862_110 Hb_009486_160--Hb_001862_110 Hb_004319_070 Hb_004319_070 Hb_009486_160--Hb_004319_070 Hb_000363_120 Hb_000363_120 Hb_009486_160--Hb_000363_120 Hb_004899_040 Hb_004899_040 Hb_009486_160--Hb_004899_040 Hb_001427_150 Hb_001427_150 Hb_011249_060--Hb_001427_150 Hb_009302_030 Hb_009302_030 Hb_011249_060--Hb_009302_030 Hb_011249_060--Hb_004899_040 Hb_002903_140 Hb_002903_140 Hb_011249_060--Hb_002903_140 Hb_015183_100 Hb_015183_100 Hb_011249_060--Hb_015183_100 Hb_001257_100 Hb_001257_100 Hb_002812_010--Hb_001257_100 Hb_002812_010--Hb_001862_110 Hb_159295_010 Hb_159295_010 Hb_002812_010--Hb_159295_010 Hb_000926_150 Hb_000926_150 Hb_002812_010--Hb_000926_150 Hb_008948_140 Hb_008948_140 Hb_002812_010--Hb_008948_140 Hb_007054_040 Hb_007054_040 Hb_001862_110--Hb_007054_040 Hb_001541_250 Hb_001541_250 Hb_001862_110--Hb_001541_250 Hb_001488_040 Hb_001488_040 Hb_001862_110--Hb_001488_040 Hb_001862_110--Hb_000926_150 Hb_000227_310 Hb_000227_310 Hb_004319_070--Hb_000227_310 Hb_004526_010 Hb_004526_010 Hb_004319_070--Hb_004526_010 Hb_004195_120 Hb_004195_120 Hb_004319_070--Hb_004195_120 Hb_000189_630 Hb_000189_630 Hb_004319_070--Hb_000189_630 Hb_004319_070--Hb_011249_060 Hb_000094_090 Hb_000094_090 Hb_000363_120--Hb_000094_090 Hb_000809_160 Hb_000809_160 Hb_000363_120--Hb_000809_160 Hb_031641_010 Hb_031641_010 Hb_000363_120--Hb_031641_010 Hb_000340_030 Hb_000340_030 Hb_000363_120--Hb_000340_030 Hb_000363_120--Hb_004899_040 Hb_001545_150 Hb_001545_150 Hb_000363_120--Hb_001545_150 Hb_004899_040--Hb_009302_030 Hb_004899_040--Hb_000094_090 Hb_000649_250 Hb_000649_250 Hb_004899_040--Hb_000649_250 Hb_000703_200 Hb_000703_200 Hb_004899_040--Hb_000703_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6694 47.5499 25.9671 14.7163 15.055 9.88694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.11596 12.3164 10.2323 20.4776 15.7857

CAGE analysis