Hb_001427_150

Information

Type -
Description -
Location Contig1427: 143770-149295
Sequence    

Annotation

kegg
ID rcu:RCOM_1048170
description protein with unknown function
nr
ID XP_012076797.1
description PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
swissprot
ID Q54I39
description IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1
trembl
ID A0A067KFK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07319 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_150 0.0 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
2 Hb_011249_060 0.0562452825 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
3 Hb_004899_040 0.0813435213 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
4 Hb_009302_030 0.0832002662 - - hypothetical protein RCOM_1176340 [Ricinus communis]
5 Hb_001488_040 0.0833142471 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
6 Hb_002928_190 0.0852997816 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
7 Hb_005765_040 0.0882583286 - - transcription elongation factor s-II, putative [Ricinus communis]
8 Hb_000373_170 0.0887404952 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
9 Hb_009486_160 0.0911670832 - - PREDICTED: metacaspase-1 [Jatropha curcas]
10 Hb_003929_210 0.0945319875 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
11 Hb_015183_100 0.0946196847 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
12 Hb_000703_200 0.0952849146 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
13 Hb_000645_130 0.09588399 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
14 Hb_003939_060 0.0963540098 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000649_250 0.097748803 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
16 Hb_002968_070 0.0984758465 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
17 Hb_004551_020 0.1005357834 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
18 Hb_013358_060 0.1009037897 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
19 Hb_012490_010 0.1020262066 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
20 Hb_005834_040 0.1030269287 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001427_150 Hb_001427_150 Hb_011249_060 Hb_011249_060 Hb_001427_150--Hb_011249_060 Hb_004899_040 Hb_004899_040 Hb_001427_150--Hb_004899_040 Hb_009302_030 Hb_009302_030 Hb_001427_150--Hb_009302_030 Hb_001488_040 Hb_001488_040 Hb_001427_150--Hb_001488_040 Hb_002928_190 Hb_002928_190 Hb_001427_150--Hb_002928_190 Hb_005765_040 Hb_005765_040 Hb_001427_150--Hb_005765_040 Hb_011249_060--Hb_009302_030 Hb_011249_060--Hb_004899_040 Hb_009486_160 Hb_009486_160 Hb_011249_060--Hb_009486_160 Hb_002903_140 Hb_002903_140 Hb_011249_060--Hb_002903_140 Hb_015183_100 Hb_015183_100 Hb_011249_060--Hb_015183_100 Hb_000363_120 Hb_000363_120 Hb_004899_040--Hb_000363_120 Hb_004899_040--Hb_009302_030 Hb_000094_090 Hb_000094_090 Hb_004899_040--Hb_000094_090 Hb_000649_250 Hb_000649_250 Hb_004899_040--Hb_000649_250 Hb_000703_200 Hb_000703_200 Hb_004899_040--Hb_000703_200 Hb_003939_060 Hb_003939_060 Hb_009302_030--Hb_003939_060 Hb_000645_130 Hb_000645_130 Hb_009302_030--Hb_000645_130 Hb_009302_030--Hb_000703_200 Hb_001534_210 Hb_001534_210 Hb_009302_030--Hb_001534_210 Hb_005834_040 Hb_005834_040 Hb_009302_030--Hb_005834_040 Hb_001862_110 Hb_001862_110 Hb_001488_040--Hb_001862_110 Hb_000699_210 Hb_000699_210 Hb_001488_040--Hb_000699_210 Hb_001488_040--Hb_009486_160 Hb_001488_040--Hb_011249_060 Hb_001488_040--Hb_005765_040 Hb_012490_010 Hb_012490_010 Hb_002928_190--Hb_012490_010 Hb_005649_080 Hb_005649_080 Hb_002928_190--Hb_005649_080 Hb_020805_150 Hb_020805_150 Hb_002928_190--Hb_020805_150 Hb_003604_050 Hb_003604_050 Hb_002928_190--Hb_003604_050 Hb_008686_020 Hb_008686_020 Hb_002928_190--Hb_008686_020 Hb_002928_190--Hb_003939_060 Hb_159295_010 Hb_159295_010 Hb_005765_040--Hb_159295_010 Hb_005765_040--Hb_011249_060 Hb_001341_160 Hb_001341_160 Hb_005765_040--Hb_001341_160 Hb_005765_040--Hb_009302_030 Hb_002918_320 Hb_002918_320 Hb_005765_040--Hb_002918_320 Hb_005765_040--Hb_003604_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.7127 5.91577 3.25404 1.869 1.08445 1.78142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.34154 1.04702 1.47425 2.96193 2.63557

CAGE analysis