Hb_012490_010

Information

Type -
Description -
Location Contig12490: 18336-34999
Sequence    

Annotation

kegg
ID rcu:RCOM_1046470
description hypothetical protein
nr
ID XP_012076979.1
description PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07552: 22399-27369 , PASA_asmbl_07553: 22627-22987 , PASA_asmbl_07554: 27761-34843
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012490_010 0.0 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
2 Hb_004696_070 0.0456711278 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
3 Hb_008686_020 0.0614227137 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
4 Hb_002928_190 0.0619114026 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
5 Hb_004551_020 0.0624631679 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
6 Hb_020805_150 0.0724559197 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_000170_100 0.0775896732 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
8 Hb_021596_010 0.0779102377 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
9 Hb_003047_020 0.0794203504 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
10 Hb_007012_040 0.0798564344 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
11 Hb_001951_100 0.081706592 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
12 Hb_002686_140 0.0825987147 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
13 Hb_022425_060 0.0865020568 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
14 Hb_005649_080 0.0873408897 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
15 Hb_000367_020 0.0887380254 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
16 Hb_000428_030 0.088746913 - - hypothetical protein RCOM_1520720 [Ricinus communis]
17 Hb_003124_270 0.0900871911 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
18 Hb_005765_040 0.0907413034 - - transcription elongation factor s-II, putative [Ricinus communis]
19 Hb_003605_220 0.0916371452 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
20 Hb_005408_030 0.0917886664 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]

Gene co-expression network

sample Hb_012490_010 Hb_012490_010 Hb_004696_070 Hb_004696_070 Hb_012490_010--Hb_004696_070 Hb_008686_020 Hb_008686_020 Hb_012490_010--Hb_008686_020 Hb_002928_190 Hb_002928_190 Hb_012490_010--Hb_002928_190 Hb_004551_020 Hb_004551_020 Hb_012490_010--Hb_004551_020 Hb_020805_150 Hb_020805_150 Hb_012490_010--Hb_020805_150 Hb_000170_100 Hb_000170_100 Hb_012490_010--Hb_000170_100 Hb_004696_070--Hb_008686_020 Hb_002686_140 Hb_002686_140 Hb_004696_070--Hb_002686_140 Hb_004696_070--Hb_020805_150 Hb_001951_100 Hb_001951_100 Hb_004696_070--Hb_001951_100 Hb_000331_100 Hb_000331_100 Hb_004696_070--Hb_000331_100 Hb_002918_320 Hb_002918_320 Hb_008686_020--Hb_002918_320 Hb_008686_020--Hb_001951_100 Hb_008686_020--Hb_002928_190 Hb_008686_020--Hb_004551_020 Hb_000367_020 Hb_000367_020 Hb_008686_020--Hb_000367_020 Hb_005649_080 Hb_005649_080 Hb_002928_190--Hb_005649_080 Hb_002928_190--Hb_020805_150 Hb_003604_050 Hb_003604_050 Hb_002928_190--Hb_003604_050 Hb_003939_060 Hb_003939_060 Hb_002928_190--Hb_003939_060 Hb_000428_030 Hb_000428_030 Hb_004551_020--Hb_000428_030 Hb_002078_470 Hb_002078_470 Hb_004551_020--Hb_002078_470 Hb_007012_040 Hb_007012_040 Hb_004551_020--Hb_007012_040 Hb_000035_100 Hb_000035_100 Hb_004551_020--Hb_000035_100 Hb_022425_060 Hb_022425_060 Hb_020805_150--Hb_022425_060 Hb_170077_010 Hb_170077_010 Hb_020805_150--Hb_170077_010 Hb_003918_030 Hb_003918_030 Hb_020805_150--Hb_003918_030 Hb_020805_150--Hb_005649_080 Hb_000170_100--Hb_003604_050 Hb_001951_170 Hb_001951_170 Hb_000170_100--Hb_001951_170 Hb_000170_100--Hb_000428_030 Hb_000200_110 Hb_000200_110 Hb_000170_100--Hb_000200_110 Hb_001341_160 Hb_001341_160 Hb_000170_100--Hb_001341_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.77366 14.9888 5.96143 6.79273 3.45177 3.69489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.19153 2.70228 4.44848 6.55524 8.38418

CAGE analysis