Hb_022425_060

Information

Type -
Description -
Location Contig22425: 46719-54449
Sequence    

Annotation

kegg
ID rcu:RCOM_1050860
description protein phosphatase 2c, putative (EC:3.1.3.16 2.7.11.12)
nr
ID XP_012076755.1
description PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
swissprot
ID Q9SL76
description Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein OS=Arabidopsis thaliana GN=At2g20050/At2g20040 PE=2 SV=2
trembl
ID A0A067KC84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07288 PE=3 SV=1
Gene Ontology
ID GO:0005886
description protein phosphatase 2c and cyclic nucleotide-binding kinase domain-containing protein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23329: 46432-46558 , PASA_asmbl_23330: 46839-54675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022425_060 0.0 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
2 Hb_001828_170 0.0499309185 - - PREDICTED: protein TPLATE [Jatropha curcas]
3 Hb_020805_150 0.0617436305 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_001329_200 0.0638372144 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
5 Hb_010407_080 0.0669051519 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
6 Hb_007839_020 0.0707715219 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003918_030 0.0709032877 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
8 Hb_000347_400 0.071207591 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
9 Hb_022425_030 0.0713017243 - - PREDICTED: casein kinase I [Jatropha curcas]
10 Hb_000347_300 0.0722418518 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
11 Hb_000008_240 0.0728358922 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000479_070 0.0728492278 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
13 Hb_026198_060 0.0731922931 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
14 Hb_004044_050 0.0737246995 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
15 Hb_000649_250 0.0747899 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
16 Hb_000110_350 0.0760048053 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
17 Hb_001473_110 0.0770497369 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
18 Hb_002686_230 0.0775654004 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_002686_140 0.0776039794 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
20 Hb_024650_080 0.0788988608 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]

Gene co-expression network

sample Hb_022425_060 Hb_022425_060 Hb_001828_170 Hb_001828_170 Hb_022425_060--Hb_001828_170 Hb_020805_150 Hb_020805_150 Hb_022425_060--Hb_020805_150 Hb_001329_200 Hb_001329_200 Hb_022425_060--Hb_001329_200 Hb_010407_080 Hb_010407_080 Hb_022425_060--Hb_010407_080 Hb_007839_020 Hb_007839_020 Hb_022425_060--Hb_007839_020 Hb_003918_030 Hb_003918_030 Hb_022425_060--Hb_003918_030 Hb_000347_300 Hb_000347_300 Hb_001828_170--Hb_000347_300 Hb_002817_060 Hb_002817_060 Hb_001828_170--Hb_002817_060 Hb_001329_250 Hb_001329_250 Hb_001828_170--Hb_001329_250 Hb_022425_030 Hb_022425_030 Hb_001828_170--Hb_022425_030 Hb_003498_080 Hb_003498_080 Hb_001828_170--Hb_003498_080 Hb_002928_190 Hb_002928_190 Hb_020805_150--Hb_002928_190 Hb_170077_010 Hb_170077_010 Hb_020805_150--Hb_170077_010 Hb_020805_150--Hb_003918_030 Hb_012490_010 Hb_012490_010 Hb_020805_150--Hb_012490_010 Hb_005649_080 Hb_005649_080 Hb_020805_150--Hb_005649_080 Hb_009615_160 Hb_009615_160 Hb_001329_200--Hb_009615_160 Hb_001329_200--Hb_007839_020 Hb_000802_090 Hb_000802_090 Hb_001329_200--Hb_000802_090 Hb_011360_050 Hb_011360_050 Hb_001329_200--Hb_011360_050 Hb_001328_080 Hb_001328_080 Hb_001329_200--Hb_001328_080 Hb_010407_080--Hb_007839_020 Hb_002686_230 Hb_002686_230 Hb_010407_080--Hb_002686_230 Hb_001269_380 Hb_001269_380 Hb_010407_080--Hb_001269_380 Hb_010407_080--Hb_001329_200 Hb_033312_130 Hb_033312_130 Hb_010407_080--Hb_033312_130 Hb_007839_020--Hb_011360_050 Hb_007839_020--Hb_001328_080 Hb_001408_110 Hb_001408_110 Hb_007839_020--Hb_001408_110 Hb_000479_070 Hb_000479_070 Hb_003918_030--Hb_000479_070 Hb_001545_150 Hb_001545_150 Hb_003918_030--Hb_001545_150 Hb_001473_110 Hb_001473_110 Hb_003918_030--Hb_001473_110 Hb_003929_210 Hb_003929_210 Hb_003918_030--Hb_003929_210 Hb_003939_060 Hb_003939_060 Hb_003918_030--Hb_003939_060 Hb_000110_350 Hb_000110_350 Hb_003918_030--Hb_000110_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4222 32.2679 17.4152 23.8717 10.3125 10.871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.11934 8.22389 14.7333 16.8971 19.0118

CAGE analysis