Hb_001828_170

Information

Type -
Description -
Location Contig1828: 228762-235998
Sequence    

Annotation

kegg
ID rcu:RCOM_1678570
description hypothetical protein
nr
ID XP_012070910.1
description PREDICTED: protein TPLATE [Jatropha curcas]
swissprot
ID F4J8D3
description Protein TPLATE OS=Arabidopsis thaliana GN=TPLATE PE=1 SV=1
trembl
ID A0A067LD62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10162 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein tplate

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17833: 228875-229035 , PASA_asmbl_17834: 229379-236030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_170 0.0 - - PREDICTED: protein TPLATE [Jatropha curcas]
2 Hb_000347_300 0.0472720921 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
3 Hb_022425_060 0.0499309185 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
4 Hb_002817_060 0.0611753907 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
5 Hb_001329_250 0.067772187 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
6 Hb_022425_030 0.0696818541 - - PREDICTED: casein kinase I [Jatropha curcas]
7 Hb_003498_080 0.069939543 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
8 Hb_004044_050 0.0700874453 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
9 Hb_012055_040 0.0701037741 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
10 Hb_005977_070 0.0778071347 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
11 Hb_002631_210 0.0794803075 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
12 Hb_000212_420 0.0807882024 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
13 Hb_009615_160 0.0810976258 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
14 Hb_005649_080 0.0815874585 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
15 Hb_031527_030 0.0816595217 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
16 Hb_000003_100 0.0816756374 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
17 Hb_020805_150 0.08216488 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_024650_080 0.0827936081 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
19 Hb_002686_140 0.0828743658 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
20 Hb_000123_180 0.084188886 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001828_170 Hb_001828_170 Hb_000347_300 Hb_000347_300 Hb_001828_170--Hb_000347_300 Hb_022425_060 Hb_022425_060 Hb_001828_170--Hb_022425_060 Hb_002817_060 Hb_002817_060 Hb_001828_170--Hb_002817_060 Hb_001329_250 Hb_001329_250 Hb_001828_170--Hb_001329_250 Hb_022425_030 Hb_022425_030 Hb_001828_170--Hb_022425_030 Hb_003498_080 Hb_003498_080 Hb_001828_170--Hb_003498_080 Hb_000347_300--Hb_002817_060 Hb_000347_300--Hb_022425_030 Hb_004044_050 Hb_004044_050 Hb_000347_300--Hb_004044_050 Hb_000347_300--Hb_022425_060 Hb_002686_140 Hb_002686_140 Hb_000347_300--Hb_002686_140 Hb_020805_150 Hb_020805_150 Hb_022425_060--Hb_020805_150 Hb_001329_200 Hb_001329_200 Hb_022425_060--Hb_001329_200 Hb_010407_080 Hb_010407_080 Hb_022425_060--Hb_010407_080 Hb_007839_020 Hb_007839_020 Hb_022425_060--Hb_007839_020 Hb_003918_030 Hb_003918_030 Hb_022425_060--Hb_003918_030 Hb_001511_180 Hb_001511_180 Hb_002817_060--Hb_001511_180 Hb_002817_060--Hb_001329_250 Hb_006839_010 Hb_006839_010 Hb_002817_060--Hb_006839_010 Hb_000123_180 Hb_000123_180 Hb_002817_060--Hb_000123_180 Hb_001329_250--Hb_003498_080 Hb_000212_420 Hb_000212_420 Hb_001329_250--Hb_000212_420 Hb_005214_140 Hb_005214_140 Hb_001329_250--Hb_005214_140 Hb_001329_250--Hb_004044_050 Hb_000270_190 Hb_000270_190 Hb_001329_250--Hb_000270_190 Hb_022425_030--Hb_004044_050 Hb_000008_240 Hb_000008_240 Hb_022425_030--Hb_000008_240 Hb_024650_080 Hb_024650_080 Hb_022425_030--Hb_024650_080 Hb_031527_030 Hb_031527_030 Hb_022425_030--Hb_031527_030 Hb_003498_080--Hb_000212_420 Hb_001776_020 Hb_001776_020 Hb_003498_080--Hb_001776_020 Hb_001481_060 Hb_001481_060 Hb_003498_080--Hb_001481_060 Hb_003040_050 Hb_003040_050 Hb_003498_080--Hb_003040_050 Hb_012114_100 Hb_012114_100 Hb_003498_080--Hb_012114_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.80776 9.42384 5.62579 8.82972 3.77599 4.26616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35124 2.89271 5.6523 6.21696 7.26008

CAGE analysis