Hb_022425_030

Information

Type -
Description -
Location Contig22425: 21968-29018
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09140g
description POPTRDRAFT_835886; casein kinase family protein
nr
ID XP_012076747.1
description PREDICTED: casein kinase I [Jatropha curcas]
swissprot
ID P42158
description Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2
trembl
ID A0A067KPL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07285 PE=3 SV=1
Gene Ontology
ID GO:0004674
description casein kinase i

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23318: 21827-28795 , PASA_asmbl_23319: 27588-28795 , PASA_asmbl_23321: 25725-26465 , PASA_asmbl_23323: 21917-27399 , PASA_asmbl_23324: 23394-23736
cDNA
(Sanger)
(ID:Location)		 015_I05.ab1: 21827-23873 , 039_L02.ab1: 21827-23447

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022425_030 0.0 - - PREDICTED: casein kinase I [Jatropha curcas]
2 Hb_004044_050 0.0574869358 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
3 Hb_000347_300 0.0610127148 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
4 Hb_000008_240 0.0630006337 - - conserved hypothetical protein [Ricinus communis]
5 Hb_024650_080 0.0638010212 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
6 Hb_031527_030 0.0695937372 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
7 Hb_001828_170 0.0696818541 - - PREDICTED: protein TPLATE [Jatropha curcas]
8 Hb_000331_580 0.0701937126 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
9 Hb_022425_060 0.0713017243 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
10 Hb_170077_010 0.0719655664 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
11 Hb_000003_100 0.0744358251 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
12 Hb_007245_020 0.0774766575 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
13 Hb_009615_160 0.0781217887 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
14 Hb_002849_170 0.0795310179 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
15 Hb_000120_910 0.0796777425 - - plant ubiquilin, putative [Ricinus communis]
16 Hb_004517_020 0.080366987 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
17 Hb_000103_290 0.0804746717 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
18 Hb_000941_030 0.0812047521 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
19 Hb_000020_160 0.0814884232 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
20 Hb_060980_010 0.0836900219 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_022425_030 Hb_022425_030 Hb_004044_050 Hb_004044_050 Hb_022425_030--Hb_004044_050 Hb_000347_300 Hb_000347_300 Hb_022425_030--Hb_000347_300 Hb_000008_240 Hb_000008_240 Hb_022425_030--Hb_000008_240 Hb_024650_080 Hb_024650_080 Hb_022425_030--Hb_024650_080 Hb_031527_030 Hb_031527_030 Hb_022425_030--Hb_031527_030 Hb_001828_170 Hb_001828_170 Hb_022425_030--Hb_001828_170 Hb_005214_140 Hb_005214_140 Hb_004044_050--Hb_005214_140 Hb_001329_250 Hb_001329_250 Hb_004044_050--Hb_001329_250 Hb_004044_050--Hb_000347_300 Hb_000110_350 Hb_000110_350 Hb_004044_050--Hb_000110_350 Hb_170077_010 Hb_170077_010 Hb_004044_050--Hb_170077_010 Hb_000347_300--Hb_001828_170 Hb_002817_060 Hb_002817_060 Hb_000347_300--Hb_002817_060 Hb_022425_060 Hb_022425_060 Hb_000347_300--Hb_022425_060 Hb_002686_140 Hb_002686_140 Hb_000347_300--Hb_002686_140 Hb_000331_580 Hb_000331_580 Hb_000008_240--Hb_000331_580 Hb_004517_020 Hb_004517_020 Hb_000008_240--Hb_004517_020 Hb_002768_050 Hb_002768_050 Hb_000008_240--Hb_002768_050 Hb_005568_040 Hb_005568_040 Hb_000008_240--Hb_005568_040 Hb_002007_110 Hb_002007_110 Hb_000008_240--Hb_002007_110 Hb_000479_240 Hb_000479_240 Hb_000008_240--Hb_000479_240 Hb_001408_110 Hb_001408_110 Hb_024650_080--Hb_001408_110 Hb_016172_030 Hb_016172_030 Hb_024650_080--Hb_016172_030 Hb_000103_290 Hb_000103_290 Hb_024650_080--Hb_000103_290 Hb_000926_150 Hb_000926_150 Hb_024650_080--Hb_000926_150 Hb_000020_160 Hb_000020_160 Hb_024650_080--Hb_000020_160 Hb_012286_040 Hb_012286_040 Hb_031527_030--Hb_012286_040 Hb_012055_040 Hb_012055_040 Hb_031527_030--Hb_012055_040 Hb_000003_100 Hb_000003_100 Hb_031527_030--Hb_000003_100 Hb_004037_020 Hb_004037_020 Hb_031527_030--Hb_004037_020 Hb_000089_180 Hb_000089_180 Hb_031527_030--Hb_000089_180 Hb_011849_040 Hb_011849_040 Hb_031527_030--Hb_011849_040 Hb_001828_170--Hb_022425_060 Hb_001828_170--Hb_002817_060 Hb_001828_170--Hb_001329_250 Hb_003498_080 Hb_003498_080 Hb_001828_170--Hb_003498_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6066 24.9898 14.387 20.8504 13.4797 8.85593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.69182 7.09636 10.9783 18.1515 18.4436

CAGE analysis