Hb_016172_030

Information

Type -
Description -
Location Contig16172: 21855-32999
Sequence    

Annotation

kegg
ID rcu:RCOM_0611050
description o-linked n-acetylglucosamine transferase, ogt, putative
nr
ID XP_012089398.1
description PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
swissprot
ID Q9M8Y0
description Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1
trembl
ID A0A067JIS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23590 PE=4 SV=1
Gene Ontology
ID GO:0016757
description probable udp-n-acetylglucosamine--peptide n-acetylglucosaminyltransferase sec

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14516: 22212-32997 , PASA_asmbl_14517: 22212-32997 , PASA_asmbl_14518: 22801-29730
cDNA
(Sanger)
(ID:Location)		 023_I04.ab1: 32622-32995 , 024_E20.ab1: 32777-32997

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016172_030 0.0 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
2 Hb_060980_010 0.0433949501 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
3 Hb_021165_010 0.0496392605 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
4 Hb_004037_020 0.0497815828 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
5 Hb_027506_010 0.0512219878 - - PREDICTED: cullin-4 [Jatropha curcas]
6 Hb_065500_020 0.0574570188 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
7 Hb_024650_080 0.0587747648 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
8 Hb_000409_050 0.0599066516 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
9 Hb_000103_290 0.0601216449 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
10 Hb_008289_040 0.0601858779 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
11 Hb_000702_090 0.0616635273 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
12 Hb_009615_160 0.0628535657 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
13 Hb_086063_020 0.0649938356 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
14 Hb_033312_040 0.0670548295 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
15 Hb_031527_030 0.0673356344 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
16 Hb_000317_100 0.0682227877 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
17 Hb_011819_020 0.068498295 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
18 Hb_000954_010 0.0685718193 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
19 Hb_001817_170 0.0693858465 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
20 Hb_002749_060 0.0701225123 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]

Gene co-expression network

sample Hb_016172_030 Hb_016172_030 Hb_060980_010 Hb_060980_010 Hb_016172_030--Hb_060980_010 Hb_021165_010 Hb_021165_010 Hb_016172_030--Hb_021165_010 Hb_004037_020 Hb_004037_020 Hb_016172_030--Hb_004037_020 Hb_027506_010 Hb_027506_010 Hb_016172_030--Hb_027506_010 Hb_065500_020 Hb_065500_020 Hb_016172_030--Hb_065500_020 Hb_024650_080 Hb_024650_080 Hb_016172_030--Hb_024650_080 Hb_060980_010--Hb_027506_010 Hb_019840_030 Hb_019840_030 Hb_060980_010--Hb_019840_030 Hb_060980_010--Hb_065500_020 Hb_000409_050 Hb_000409_050 Hb_060980_010--Hb_000409_050 Hb_000001_170 Hb_000001_170 Hb_060980_010--Hb_000001_170 Hb_000702_090 Hb_000702_090 Hb_021165_010--Hb_000702_090 Hb_008289_040 Hb_008289_040 Hb_021165_010--Hb_008289_040 Hb_000017_230 Hb_000017_230 Hb_021165_010--Hb_000017_230 Hb_021165_010--Hb_060980_010 Hb_001114_110 Hb_001114_110 Hb_021165_010--Hb_001114_110 Hb_000345_160 Hb_000345_160 Hb_004037_020--Hb_000345_160 Hb_001481_060 Hb_001481_060 Hb_004037_020--Hb_001481_060 Hb_086063_020 Hb_086063_020 Hb_004037_020--Hb_086063_020 Hb_000317_100 Hb_000317_100 Hb_004037_020--Hb_000317_100 Hb_004705_170 Hb_004705_170 Hb_004037_020--Hb_004705_170 Hb_000206_160 Hb_000206_160 Hb_027506_010--Hb_000206_160 Hb_003758_010 Hb_003758_010 Hb_027506_010--Hb_003758_010 Hb_027506_010--Hb_000409_050 Hb_027506_010--Hb_065500_020 Hb_002749_060 Hb_002749_060 Hb_065500_020--Hb_002749_060 Hb_011819_020 Hb_011819_020 Hb_065500_020--Hb_011819_020 Hb_065500_020--Hb_021165_010 Hb_065500_020--Hb_008289_040 Hb_001408_110 Hb_001408_110 Hb_024650_080--Hb_001408_110 Hb_022425_030 Hb_022425_030 Hb_024650_080--Hb_022425_030 Hb_000103_290 Hb_000103_290 Hb_024650_080--Hb_000103_290 Hb_000926_150 Hb_000926_150 Hb_024650_080--Hb_000926_150 Hb_000020_160 Hb_000020_160 Hb_024650_080--Hb_000020_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4251 36.9283 32.7944 44.3225 23.0973 22.0856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5984 19.6249 18.6133 39.3646 34.9495

CAGE analysis