Hb_000206_160

Information

Type -
Description -
Location Contig206: 246226-257822
Sequence    

Annotation

kegg
ID rcu:RCOM_0413410
description hypothetical protein
nr
ID XP_012087738.1
description PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
swissprot
ID A1L0Z4
description TBCC domain-containing protein 1 OS=Xenopus tropicalis GN=tbccd1 PE=2 SV=1
trembl
ID A0A067JL23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25513 PE=4 SV=1
Gene Ontology
ID GO:0003779
description tubulin binding cofactor c domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21231: 246223-257416
cDNA
(Sanger)
(ID:Location)		 037_H24.ab1: 246223-249205

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_160 0.0 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
2 Hb_027506_010 0.0524035736 - - PREDICTED: cullin-4 [Jatropha curcas]
3 Hb_000676_330 0.0545265816 - - protein with unknown function [Ricinus communis]
4 Hb_003758_010 0.0627536227 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
5 Hb_005701_050 0.0642423824 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
6 Hb_000996_020 0.0657404524 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
7 Hb_000373_170 0.0743427934 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
8 Hb_002357_070 0.0751069173 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
9 Hb_002411_110 0.0752163206 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
10 Hb_000270_190 0.0756165731 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
11 Hb_006478_030 0.0758802624 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
12 Hb_004044_050 0.076076395 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
13 Hb_060980_010 0.0764672811 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
14 Hb_011618_070 0.0769590614 - - NMDA receptor-regulated protein [Medicago truncatula]
15 Hb_000510_360 0.0770415554 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
16 Hb_002631_210 0.0780576711 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
17 Hb_000003_100 0.0780737635 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
18 Hb_001723_010 0.0790245269 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
19 Hb_004517_020 0.0790383486 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
20 Hb_000173_190 0.0791649067 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000206_160 Hb_000206_160 Hb_027506_010 Hb_027506_010 Hb_000206_160--Hb_027506_010 Hb_000676_330 Hb_000676_330 Hb_000206_160--Hb_000676_330 Hb_003758_010 Hb_003758_010 Hb_000206_160--Hb_003758_010 Hb_005701_050 Hb_005701_050 Hb_000206_160--Hb_005701_050 Hb_000996_020 Hb_000996_020 Hb_000206_160--Hb_000996_020 Hb_000373_170 Hb_000373_170 Hb_000206_160--Hb_000373_170 Hb_060980_010 Hb_060980_010 Hb_027506_010--Hb_060980_010 Hb_016172_030 Hb_016172_030 Hb_027506_010--Hb_016172_030 Hb_027506_010--Hb_003758_010 Hb_000409_050 Hb_000409_050 Hb_027506_010--Hb_000409_050 Hb_065500_020 Hb_065500_020 Hb_027506_010--Hb_065500_020 Hb_002768_050 Hb_002768_050 Hb_000676_330--Hb_002768_050 Hb_000445_060 Hb_000445_060 Hb_000676_330--Hb_000445_060 Hb_000676_330--Hb_000996_020 Hb_000868_120 Hb_000868_120 Hb_000676_330--Hb_000868_120 Hb_000676_330--Hb_027506_010 Hb_001817_170 Hb_001817_170 Hb_003758_010--Hb_001817_170 Hb_000510_360 Hb_000510_360 Hb_003758_010--Hb_000510_360 Hb_033312_040 Hb_033312_040 Hb_003758_010--Hb_033312_040 Hb_006189_020 Hb_006189_020 Hb_003758_010--Hb_006189_020 Hb_000664_120 Hb_000664_120 Hb_005701_050--Hb_000664_120 Hb_000958_050 Hb_000958_050 Hb_005701_050--Hb_000958_050 Hb_012055_110 Hb_012055_110 Hb_005701_050--Hb_012055_110 Hb_005701_050--Hb_000996_020 Hb_000934_210 Hb_000934_210 Hb_005701_050--Hb_000934_210 Hb_000996_020--Hb_000445_060 Hb_000996_020--Hb_000373_170 Hb_002461_020 Hb_002461_020 Hb_000996_020--Hb_002461_020 Hb_000529_060 Hb_000529_060 Hb_000996_020--Hb_000529_060 Hb_000661_120 Hb_000661_120 Hb_000996_020--Hb_000661_120 Hb_005333_140 Hb_005333_140 Hb_000996_020--Hb_005333_140 Hb_004517_020 Hb_004517_020 Hb_000373_170--Hb_004517_020 Hb_000373_170--Hb_000445_060 Hb_001723_010 Hb_001723_010 Hb_000373_170--Hb_001723_010 Hb_000373_170--Hb_000661_120 Hb_000373_170--Hb_002768_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.95051 15.6857 13.7645 10.7463 9.12814 7.3513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.15633 6.2981 8.6988 13.9501 13.5596

CAGE analysis