Hb_000409_050

Information

Type transcription factor
Description TF Family: HMG
Location Contig409: 152993-162703
Sequence    

Annotation

kegg
ID rcu:RCOM_0855030
description structure-specific recognition protein, putative (EC:1.3.1.74)
nr
ID XP_012082971.1
description PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
swissprot
ID O04235
description FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1
trembl
ID B9RUM8
description Structure-specific recognition protein, putative OS=Ricinus communis GN=RCOM_0855030 PE=4 SV=1
Gene Ontology
ID GO:0005719
description fact complex subunit ssrp1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40398: 153036-162690 , PASA_asmbl_40399: 156099-156327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000409_050 0.0 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
2 Hb_005489_040 0.0481259661 - - PREDICTED: cullin-1 [Jatropha curcas]
3 Hb_006189_020 0.051728624 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
4 Hb_000773_040 0.0581157696 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
5 Hb_027506_010 0.0597661427 - - PREDICTED: cullin-4 [Jatropha curcas]
6 Hb_016172_030 0.0599066516 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
7 Hb_060980_010 0.0600605283 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
8 Hb_000363_190 0.0641749674 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
9 Hb_073171_070 0.0651349927 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
10 Hb_065500_020 0.0659614213 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
11 Hb_188281_040 0.0666893371 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
12 Hb_033312_040 0.0667499711 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
13 Hb_000317_100 0.0688168496 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
14 Hb_004037_020 0.0694788667 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
15 Hb_002411_110 0.0698922631 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
16 Hb_001269_600 0.0700641332 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_011819_020 0.0722081884 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
18 Hb_000406_200 0.0728918455 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
19 Hb_000477_050 0.0732757778 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
20 Hb_003777_290 0.0734949808 - - polypyrimidine tract binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000409_050 Hb_000409_050 Hb_005489_040 Hb_005489_040 Hb_000409_050--Hb_005489_040 Hb_006189_020 Hb_006189_020 Hb_000409_050--Hb_006189_020 Hb_000773_040 Hb_000773_040 Hb_000409_050--Hb_000773_040 Hb_027506_010 Hb_027506_010 Hb_000409_050--Hb_027506_010 Hb_016172_030 Hb_016172_030 Hb_000409_050--Hb_016172_030 Hb_060980_010 Hb_060980_010 Hb_000409_050--Hb_060980_010 Hb_073171_070 Hb_073171_070 Hb_005489_040--Hb_073171_070 Hb_005260_030 Hb_005260_030 Hb_005489_040--Hb_005260_030 Hb_003117_030 Hb_003117_030 Hb_005489_040--Hb_003117_030 Hb_007413_010 Hb_007413_010 Hb_005489_040--Hb_007413_010 Hb_188281_040 Hb_188281_040 Hb_005489_040--Hb_188281_040 Hb_033312_040 Hb_033312_040 Hb_006189_020--Hb_033312_040 Hb_004333_040 Hb_004333_040 Hb_006189_020--Hb_004333_040 Hb_001817_170 Hb_001817_170 Hb_006189_020--Hb_001817_170 Hb_000510_360 Hb_000510_360 Hb_006189_020--Hb_000510_360 Hb_000139_080 Hb_000139_080 Hb_006189_020--Hb_000139_080 Hb_000773_040--Hb_073171_070 Hb_000270_190 Hb_000270_190 Hb_000773_040--Hb_000270_190 Hb_000317_100 Hb_000317_100 Hb_000773_040--Hb_000317_100 Hb_002890_130 Hb_002890_130 Hb_000773_040--Hb_002890_130 Hb_003040_050 Hb_003040_050 Hb_000773_040--Hb_003040_050 Hb_027506_010--Hb_060980_010 Hb_027506_010--Hb_016172_030 Hb_000206_160 Hb_000206_160 Hb_027506_010--Hb_000206_160 Hb_003758_010 Hb_003758_010 Hb_027506_010--Hb_003758_010 Hb_065500_020 Hb_065500_020 Hb_027506_010--Hb_065500_020 Hb_016172_030--Hb_060980_010 Hb_021165_010 Hb_021165_010 Hb_016172_030--Hb_021165_010 Hb_004037_020 Hb_004037_020 Hb_016172_030--Hb_004037_020 Hb_016172_030--Hb_065500_020 Hb_024650_080 Hb_024650_080 Hb_016172_030--Hb_024650_080 Hb_019840_030 Hb_019840_030 Hb_060980_010--Hb_019840_030 Hb_060980_010--Hb_065500_020 Hb_000001_170 Hb_000001_170 Hb_060980_010--Hb_000001_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8948 31.3286 37.9322 40.0385 27.2364 24.5612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.011 26.141 20.0903 45.5355 44.7875

CAGE analysis