Hb_005260_030

Information

Type -
Description -
Location Contig5260: 26739-36214
Sequence    

Annotation

kegg
ID rcu:RCOM_1065100
description tRNA-pseudouridine synthase, putative
nr
ID XP_012071835.1
description PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
swissprot
ID Q9RB36
description tRNA pseudouridine synthase B OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=truB PE=3 SV=1
trembl
ID A0A067LDC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10237 PE=3 SV=1
Gene Ontology
ID GO:0003723
description pseudouridine synthase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47002: 27795-36112 , PASA_asmbl_47003: 32307-32609 , PASA_asmbl_47004: 35268-35779 , PASA_asmbl_47005: 31781-31972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005260_030 0.0 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
2 Hb_005489_040 0.0609813762 - - PREDICTED: cullin-1 [Jatropha curcas]
3 Hb_007413_010 0.0614385759 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
4 Hb_073171_070 0.0649641717 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
5 Hb_003117_030 0.0689807902 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
6 Hb_017469_110 0.0702736586 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
7 Hb_000270_170 0.0707700451 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
8 Hb_000300_470 0.0717844389 - - PREDICTED: nucleolin-like [Jatropha curcas]
9 Hb_188281_040 0.0718182816 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
10 Hb_002581_010 0.0749150668 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
11 Hb_010863_050 0.0751389312 - - OTU domain-containing protein 6B, putative [Ricinus communis]
12 Hb_006663_060 0.0779212494 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
13 Hb_001488_020 0.0786925972 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
14 Hb_013459_020 0.0801094725 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
15 Hb_002774_190 0.0811200856 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
16 Hb_134849_010 0.0819713144 - - ATP synthase subunit d, putative [Ricinus communis]
17 Hb_011537_060 0.0825948012 - - UPF0061 protein azo1574 [Morus notabilis]
18 Hb_001789_110 0.0829789758 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_004218_180 0.0836795765 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
20 Hb_000409_050 0.0843771138 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]

Gene co-expression network

sample Hb_005260_030 Hb_005260_030 Hb_005489_040 Hb_005489_040 Hb_005260_030--Hb_005489_040 Hb_007413_010 Hb_007413_010 Hb_005260_030--Hb_007413_010 Hb_073171_070 Hb_073171_070 Hb_005260_030--Hb_073171_070 Hb_003117_030 Hb_003117_030 Hb_005260_030--Hb_003117_030 Hb_017469_110 Hb_017469_110 Hb_005260_030--Hb_017469_110 Hb_000270_170 Hb_000270_170 Hb_005260_030--Hb_000270_170 Hb_000409_050 Hb_000409_050 Hb_005489_040--Hb_000409_050 Hb_005489_040--Hb_073171_070 Hb_005489_040--Hb_003117_030 Hb_005489_040--Hb_007413_010 Hb_188281_040 Hb_188281_040 Hb_005489_040--Hb_188281_040 Hb_006913_020 Hb_006913_020 Hb_007413_010--Hb_006913_020 Hb_007413_010--Hb_003117_030 Hb_008948_020 Hb_008948_020 Hb_007413_010--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_007413_010--Hb_001377_190 Hb_001925_060 Hb_001925_060 Hb_007413_010--Hb_001925_060 Hb_001789_110 Hb_001789_110 Hb_007413_010--Hb_001789_110 Hb_003040_050 Hb_003040_050 Hb_073171_070--Hb_003040_050 Hb_000773_040 Hb_000773_040 Hb_073171_070--Hb_000773_040 Hb_006663_060 Hb_006663_060 Hb_073171_070--Hb_006663_060 Hb_009288_020 Hb_009288_020 Hb_073171_070--Hb_009288_020 Hb_000270_190 Hb_000270_190 Hb_073171_070--Hb_000270_190 Hb_073171_070--Hb_007413_010 Hb_002581_010 Hb_002581_010 Hb_003117_030--Hb_002581_010 Hb_003117_030--Hb_188281_040 Hb_003117_030--Hb_001789_110 Hb_003117_030--Hb_001925_060 Hb_013459_020 Hb_013459_020 Hb_017469_110--Hb_013459_020 Hb_011174_020 Hb_011174_020 Hb_017469_110--Hb_011174_020 Hb_000795_040 Hb_000795_040 Hb_017469_110--Hb_000795_040 Hb_005276_200 Hb_005276_200 Hb_017469_110--Hb_005276_200 Hb_017469_110--Hb_002581_010 Hb_001008_070 Hb_001008_070 Hb_017469_110--Hb_001008_070 Hb_000960_080 Hb_000960_080 Hb_000270_170--Hb_000960_080 Hb_001507_050 Hb_001507_050 Hb_000270_170--Hb_001507_050 Hb_011674_040 Hb_011674_040 Hb_000270_170--Hb_011674_040 Hb_006100_020 Hb_006100_020 Hb_000270_170--Hb_006100_020 Hb_000318_150 Hb_000318_150 Hb_000270_170--Hb_000318_150 Hb_001488_020 Hb_001488_020 Hb_000270_170--Hb_001488_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.55254 6.18525 8.39296 6.58606 4.14726 4.28512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.35346 4.61319 3.82197 8.68815 13.1068

CAGE analysis