Hb_000270_190

Information

Type transcription factor
Description TF Family: DDT
Location Contig270: 172254-181684
Sequence    

Annotation

kegg
ID rcu:RCOM_1513140
description tRNA ligase, putative
nr
ID XP_002511495.1
description tRNA ligase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R920
description tRNA ligase, putative OS=Ricinus communis GN=RCOM_1513140 PE=4 SV=1
Gene Ontology
ID GO:0016874
description ddt domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28177: 172759-181785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_190 0.0 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
2 Hb_000773_040 0.0490262684 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
3 Hb_073171_070 0.0537395086 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
4 Hb_005214_140 0.0573189908 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
5 Hb_003040_050 0.0669957251 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
6 Hb_004324_360 0.067351936 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
7 Hb_001329_250 0.069193456 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
8 Hb_000103_290 0.0699536261 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
9 Hb_060980_010 0.0714980776 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
10 Hb_003758_010 0.0717945261 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
11 Hb_001817_170 0.0719303622 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
12 Hb_006100_020 0.0726684811 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
13 Hb_009288_020 0.073639544 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
14 Hb_000635_090 0.0738431494 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
15 Hb_002890_130 0.0739172632 - - tip120, putative [Ricinus communis]
16 Hb_023344_140 0.0746060088 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
17 Hb_033312_040 0.0751047956 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
18 Hb_003498_080 0.0752312437 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
19 Hb_000206_160 0.0756165731 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
20 Hb_004044_050 0.075872351 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]

Gene co-expression network

sample Hb_000270_190 Hb_000270_190 Hb_000773_040 Hb_000773_040 Hb_000270_190--Hb_000773_040 Hb_073171_070 Hb_073171_070 Hb_000270_190--Hb_073171_070 Hb_005214_140 Hb_005214_140 Hb_000270_190--Hb_005214_140 Hb_003040_050 Hb_003040_050 Hb_000270_190--Hb_003040_050 Hb_004324_360 Hb_004324_360 Hb_000270_190--Hb_004324_360 Hb_001329_250 Hb_001329_250 Hb_000270_190--Hb_001329_250 Hb_000773_040--Hb_073171_070 Hb_000317_100 Hb_000317_100 Hb_000773_040--Hb_000317_100 Hb_000409_050 Hb_000409_050 Hb_000773_040--Hb_000409_050 Hb_002890_130 Hb_002890_130 Hb_000773_040--Hb_002890_130 Hb_000773_040--Hb_003040_050 Hb_073171_070--Hb_003040_050 Hb_006663_060 Hb_006663_060 Hb_073171_070--Hb_006663_060 Hb_009288_020 Hb_009288_020 Hb_073171_070--Hb_009288_020 Hb_007413_010 Hb_007413_010 Hb_073171_070--Hb_007413_010 Hb_001257_030 Hb_001257_030 Hb_005214_140--Hb_001257_030 Hb_004044_050 Hb_004044_050 Hb_005214_140--Hb_004044_050 Hb_001817_170 Hb_001817_170 Hb_005214_140--Hb_001817_170 Hb_005214_140--Hb_001329_250 Hb_000103_340 Hb_000103_340 Hb_005214_140--Hb_000103_340 Hb_003040_050--Hb_009288_020 Hb_003040_050--Hb_006663_060 Hb_003040_050--Hb_000317_100 Hb_011174_020 Hb_011174_020 Hb_003040_050--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_003040_050--Hb_001925_060 Hb_002684_020 Hb_002684_020 Hb_004324_360--Hb_002684_020 Hb_000975_210 Hb_000975_210 Hb_004324_360--Hb_000975_210 Hb_000788_030 Hb_000788_030 Hb_004324_360--Hb_000788_030 Hb_001488_020 Hb_001488_020 Hb_004324_360--Hb_001488_020 Hb_000476_060 Hb_000476_060 Hb_004324_360--Hb_000476_060 Hb_033312_040 Hb_033312_040 Hb_004324_360--Hb_033312_040 Hb_003498_080 Hb_003498_080 Hb_001329_250--Hb_003498_080 Hb_000212_420 Hb_000212_420 Hb_001329_250--Hb_000212_420 Hb_001329_250--Hb_004044_050 Hb_001828_170 Hb_001828_170 Hb_001329_250--Hb_001828_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.71433 5.92314 6.47014 6.71752 3.88803 3.91486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.0345 3.15328 3.91197 5.58293 8.10195

CAGE analysis