Hb_006663_060

Information

Type -
Description -
Location Contig6663: 70844-78206
Sequence    

Annotation

kegg
ID rcu:RCOM_0205450
description RNA binding protein, putative
nr
ID XP_012076276.1
description PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
swissprot
ID Q8CGZ0
description Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus GN=Cherp PE=1 SV=1
trembl
ID A0A067KB08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06977 PE=4 SV=1
Gene Ontology
ID GO:0003723
description calcium homeostasis endoplasmic reticulum

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53261: 70932-76790 , PASA_asmbl_53262: 76837-78144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006663_060 0.0 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
2 Hb_009288_020 0.0463980809 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
3 Hb_073171_070 0.0481691439 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
4 Hb_003040_050 0.0495268988 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
5 Hb_006210_010 0.0601072715 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
6 Hb_002874_110 0.0644040544 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
7 Hb_000568_050 0.0675755118 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
8 Hb_001541_150 0.0713733981 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002883_030 0.0743927563 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
10 Hb_011174_020 0.0745699834 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
11 Hb_007413_010 0.0753935007 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
12 Hb_000103_290 0.075596027 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
13 Hb_000317_100 0.076617621 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
14 Hb_004037_020 0.0767538609 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
15 Hb_006839_010 0.0771710711 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
16 Hb_000270_190 0.0777019656 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
17 Hb_000538_280 0.0777370565 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
18 Hb_003581_200 0.0778659616 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
19 Hb_005260_030 0.0779212494 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
20 Hb_001789_110 0.0779930935 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006663_060 Hb_006663_060 Hb_009288_020 Hb_009288_020 Hb_006663_060--Hb_009288_020 Hb_073171_070 Hb_073171_070 Hb_006663_060--Hb_073171_070 Hb_003040_050 Hb_003040_050 Hb_006663_060--Hb_003040_050 Hb_006210_010 Hb_006210_010 Hb_006663_060--Hb_006210_010 Hb_002874_110 Hb_002874_110 Hb_006663_060--Hb_002874_110 Hb_000568_050 Hb_000568_050 Hb_006663_060--Hb_000568_050 Hb_009288_020--Hb_003040_050 Hb_009288_020--Hb_073171_070 Hb_006839_010 Hb_006839_010 Hb_009288_020--Hb_006839_010 Hb_000059_230 Hb_000059_230 Hb_009288_020--Hb_000059_230 Hb_011174_020 Hb_011174_020 Hb_009288_020--Hb_011174_020 Hb_073171_070--Hb_003040_050 Hb_000773_040 Hb_000773_040 Hb_073171_070--Hb_000773_040 Hb_000270_190 Hb_000270_190 Hb_073171_070--Hb_000270_190 Hb_007413_010 Hb_007413_010 Hb_073171_070--Hb_007413_010 Hb_000317_100 Hb_000317_100 Hb_003040_050--Hb_000317_100 Hb_003040_050--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_003040_050--Hb_001925_060 Hb_001008_130 Hb_001008_130 Hb_006210_010--Hb_001008_130 Hb_000059_240 Hb_000059_240 Hb_006210_010--Hb_000059_240 Hb_003680_020 Hb_003680_020 Hb_006210_010--Hb_003680_020 Hb_001141_240 Hb_001141_240 Hb_006210_010--Hb_001141_240 Hb_001811_170 Hb_001811_170 Hb_006210_010--Hb_001811_170 Hb_002749_060 Hb_002749_060 Hb_002874_110--Hb_002749_060 Hb_000803_320 Hb_000803_320 Hb_002874_110--Hb_000803_320 Hb_002874_110--Hb_073171_070 Hb_011819_020 Hb_011819_020 Hb_002874_110--Hb_011819_020 Hb_002874_110--Hb_009288_020 Hb_000568_050--Hb_011174_020 Hb_012055_110 Hb_012055_110 Hb_000568_050--Hb_012055_110 Hb_000011_270 Hb_000011_270 Hb_000568_050--Hb_000011_270 Hb_000608_300 Hb_000608_300 Hb_000568_050--Hb_000608_300 Hb_000826_070 Hb_000826_070 Hb_000568_050--Hb_000826_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.98612 9.13541 7.76486 10.97 6.12695 5.61092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.65634 4.4977 4.59014 9.16553 14.3396

CAGE analysis