Hb_001811_170

Information

Type -
Description -
Location Contig1811: 112606-124126
Sequence    

Annotation

kegg
ID rcu:RCOM_0449340
description dynamin, putative
nr
ID XP_002532763.1
description dynamin, putative [Ricinus communis]
swissprot
ID Q8S944
description Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2
trembl
ID B9T3E4
description Dynamin, putative OS=Ricinus communis GN=RCOM_0449340 PE=3 SV=1
Gene Ontology
ID GO:0003924
description dynamin-related protein 3a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17588: 112722-123980 , PASA_asmbl_17589: 112722-123980 , PASA_asmbl_17591: 117179-117361 , PASA_asmbl_17592: 117038-117144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001811_170 0.0 - - dynamin, putative [Ricinus communis]
2 Hb_001226_130 0.0657080449 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
3 Hb_000342_050 0.0697116839 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
4 Hb_001141_240 0.0716654843 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
5 Hb_006210_010 0.0718980414 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
6 Hb_001587_030 0.0727973824 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
7 Hb_001085_080 0.078381845 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
8 Hb_021977_010 0.0784100558 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
9 Hb_008289_040 0.0790467159 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
10 Hb_000960_080 0.0811832055 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
11 Hb_003680_020 0.0815870057 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_007416_070 0.0823319984 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
13 Hb_028487_160 0.0835283951 - - clathrin assembly protein, putative [Ricinus communis]
14 Hb_001900_100 0.0840419139 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
15 Hb_001097_040 0.0841849101 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
16 Hb_001507_050 0.0847454373 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_019280_010 0.0862547842 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
18 Hb_000666_010 0.0863103 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000027_200 0.0874975428 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
20 Hb_000579_130 0.0875536535 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001811_170 Hb_001811_170 Hb_001226_130 Hb_001226_130 Hb_001811_170--Hb_001226_130 Hb_000342_050 Hb_000342_050 Hb_001811_170--Hb_000342_050 Hb_001141_240 Hb_001141_240 Hb_001811_170--Hb_001141_240 Hb_006210_010 Hb_006210_010 Hb_001811_170--Hb_006210_010 Hb_001587_030 Hb_001587_030 Hb_001811_170--Hb_001587_030 Hb_001085_080 Hb_001085_080 Hb_001811_170--Hb_001085_080 Hb_001226_130--Hb_001587_030 Hb_000649_060 Hb_000649_060 Hb_001226_130--Hb_000649_060 Hb_001226_130--Hb_000342_050 Hb_004837_280 Hb_004837_280 Hb_001226_130--Hb_004837_280 Hb_000152_700 Hb_000152_700 Hb_001226_130--Hb_000152_700 Hb_000342_050--Hb_004837_280 Hb_000787_200 Hb_000787_200 Hb_000342_050--Hb_000787_200 Hb_000342_050--Hb_001587_030 Hb_000342_050--Hb_000152_700 Hb_006100_020 Hb_006100_020 Hb_001141_240--Hb_006100_020 Hb_000815_300 Hb_000815_300 Hb_001141_240--Hb_000815_300 Hb_001141_240--Hb_006210_010 Hb_000139_080 Hb_000139_080 Hb_001141_240--Hb_000139_080 Hb_006970_020 Hb_006970_020 Hb_001141_240--Hb_006970_020 Hb_001008_130 Hb_001008_130 Hb_006210_010--Hb_001008_130 Hb_006663_060 Hb_006663_060 Hb_006210_010--Hb_006663_060 Hb_000059_240 Hb_000059_240 Hb_006210_010--Hb_000059_240 Hb_003680_020 Hb_003680_020 Hb_006210_010--Hb_003680_020 Hb_001587_030--Hb_000649_060 Hb_065500_020 Hb_065500_020 Hb_001587_030--Hb_065500_020 Hb_060980_010 Hb_060980_010 Hb_001587_030--Hb_060980_010 Hb_001587_030--Hb_004837_280 Hb_000890_070 Hb_000890_070 Hb_001587_030--Hb_000890_070 Hb_001097_040 Hb_001097_040 Hb_001085_080--Hb_001097_040 Hb_000579_130 Hb_000579_130 Hb_001085_080--Hb_000579_130 Hb_001558_040 Hb_001558_040 Hb_001085_080--Hb_001558_040 Hb_158845_060 Hb_158845_060 Hb_001085_080--Hb_158845_060 Hb_002739_120 Hb_002739_120 Hb_001085_080--Hb_002739_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.94089 14.6964 12.898 21.8602 5.75313 6.11563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.90446 6.63817 5.95816 17.6227 17.6083

CAGE analysis