Hb_004837_280

Information

Type -
Description -
Location Contig4837: 231918-235977
Sequence    

Annotation

kegg
ID rcu:RCOM_1578520
description hypothetical protein
nr
ID XP_012090026.1
description PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQ40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25941 PE=4 SV=1
Gene Ontology
ID GO:0005739
description system c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44899: 231966-235962 , PASA_asmbl_44900: 231966-235962
cDNA
(Sanger)
(ID:Location)		 014_O03.ab1: 231969-233342

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_280 0.0 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
2 Hb_000342_050 0.0653451345 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
3 Hb_001587_030 0.0689832813 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
4 Hb_002596_060 0.0719275266 - - conserved hypothetical protein [Ricinus communis]
5 Hb_107298_010 0.073622656 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
6 Hb_001307_240 0.0754000001 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
7 Hb_001226_130 0.0770871287 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
8 Hb_002639_030 0.0782667199 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
9 Hb_019840_030 0.0792990608 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
10 Hb_000703_330 0.0834687084 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000152_700 0.0838068321 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
12 Hb_060980_010 0.0846514854 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
13 Hb_021576_010 0.0862622447 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
14 Hb_004096_110 0.0863137107 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
15 Hb_004450_070 0.0870057991 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
16 Hb_003020_100 0.0872079277 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
17 Hb_065500_020 0.0879318796 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
18 Hb_003777_290 0.0888777681 - - polypyrimidine tract binding protein, putative [Ricinus communis]
19 Hb_002686_200 0.089243932 - - glucosidase II beta subunit, putative [Ricinus communis]
20 Hb_001900_100 0.0898329203 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004837_280 Hb_004837_280 Hb_000342_050 Hb_000342_050 Hb_004837_280--Hb_000342_050 Hb_001587_030 Hb_001587_030 Hb_004837_280--Hb_001587_030 Hb_002596_060 Hb_002596_060 Hb_004837_280--Hb_002596_060 Hb_107298_010 Hb_107298_010 Hb_004837_280--Hb_107298_010 Hb_001307_240 Hb_001307_240 Hb_004837_280--Hb_001307_240 Hb_001226_130 Hb_001226_130 Hb_004837_280--Hb_001226_130 Hb_001811_170 Hb_001811_170 Hb_000342_050--Hb_001811_170 Hb_000342_050--Hb_001226_130 Hb_000787_200 Hb_000787_200 Hb_000342_050--Hb_000787_200 Hb_000342_050--Hb_001587_030 Hb_000152_700 Hb_000152_700 Hb_000342_050--Hb_000152_700 Hb_001587_030--Hb_001226_130 Hb_000649_060 Hb_000649_060 Hb_001587_030--Hb_000649_060 Hb_065500_020 Hb_065500_020 Hb_001587_030--Hb_065500_020 Hb_060980_010 Hb_060980_010 Hb_001587_030--Hb_060980_010 Hb_000890_070 Hb_000890_070 Hb_001587_030--Hb_000890_070 Hb_019840_030 Hb_019840_030 Hb_002596_060--Hb_019840_030 Hb_000122_080 Hb_000122_080 Hb_002596_060--Hb_000122_080 Hb_002596_060--Hb_060980_010 Hb_002259_080 Hb_002259_080 Hb_002596_060--Hb_002259_080 Hb_000161_210 Hb_000161_210 Hb_002596_060--Hb_000161_210 Hb_005489_140 Hb_005489_140 Hb_107298_010--Hb_005489_140 Hb_001900_100 Hb_001900_100 Hb_107298_010--Hb_001900_100 Hb_000159_120 Hb_000159_120 Hb_107298_010--Hb_000159_120 Hb_001019_050 Hb_001019_050 Hb_107298_010--Hb_001019_050 Hb_003777_290 Hb_003777_290 Hb_107298_010--Hb_003777_290 Hb_001558_040 Hb_001558_040 Hb_001307_240--Hb_001558_040 Hb_002007_260 Hb_002007_260 Hb_001307_240--Hb_002007_260 Hb_001552_030 Hb_001552_030 Hb_001307_240--Hb_001552_030 Hb_001085_290 Hb_001085_290 Hb_001307_240--Hb_001085_290 Hb_000017_230 Hb_000017_230 Hb_001307_240--Hb_000017_230 Hb_001226_130--Hb_000649_060 Hb_001226_130--Hb_001811_170 Hb_001226_130--Hb_000152_700
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3761 27.7558 36.5047 46.2123 16.6272 21.2338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.5184 13.8684 14.8973 60.0804 35.8588

CAGE analysis