Hb_000159_120

Information

Type -
Description -
Location Contig159: 187245-191577
Sequence    

Annotation

kegg
ID pop:POPTR_0011s13360g
description POPTRDRAFT_661061; hypothetical protein
nr
ID XP_012070703.1
description PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4I9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00766 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14118: 190197-190766 , PASA_asmbl_14119: 187232-187934 , PASA_asmbl_14120: 187287-191472 , PASA_asmbl_14121: 190197-191174
cDNA
(Sanger)
(ID:Location)		 024_C02.ab1: 187232-187915 , 028_N06.ab1: 187274-187858 , 030_K19.ab1: 187274-187892 , 040_B18.ab1: 187232-187932 , 041_A07.ab1: 187274-187934 , 041_O06.ab1: 187274-187934

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000159_120 0.0 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
2 Hb_012022_080 0.0759697711 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_008226_070 0.0809999299 - - PREDICTED: expansin-A8 [Jatropha curcas]
4 Hb_003906_170 0.0823793176 - - alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_001019_050 0.0918017797 - - PREDICTED: importin-13 [Jatropha curcas]
6 Hb_001221_020 0.0926080938 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
7 Hb_107298_010 0.0928541357 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
8 Hb_005648_010 0.0941457816 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
9 Hb_007441_280 0.0971597039 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
10 Hb_000190_090 0.0978873683 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
11 Hb_179924_010 0.0986398873 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
12 Hb_025336_020 0.1016018184 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
13 Hb_000327_250 0.1020500131 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
14 Hb_002093_060 0.1046708307 - - phosphoprotein phosphatase, putative [Ricinus communis]
15 Hb_001493_150 0.1052527793 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
16 Hb_016347_010 0.1054866476 - - protein transporter, putative [Ricinus communis]
17 Hb_001731_030 0.1062887922 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Gossypium raimondii]
18 Hb_002686_310 0.1086093813 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
19 Hb_021576_010 0.1089075582 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
20 Hb_011224_160 0.1100338203 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]

Gene co-expression network

sample Hb_000159_120 Hb_000159_120 Hb_012022_080 Hb_012022_080 Hb_000159_120--Hb_012022_080 Hb_008226_070 Hb_008226_070 Hb_000159_120--Hb_008226_070 Hb_003906_170 Hb_003906_170 Hb_000159_120--Hb_003906_170 Hb_001019_050 Hb_001019_050 Hb_000159_120--Hb_001019_050 Hb_001221_020 Hb_001221_020 Hb_000159_120--Hb_001221_020 Hb_107298_010 Hb_107298_010 Hb_000159_120--Hb_107298_010 Hb_000190_090 Hb_000190_090 Hb_012022_080--Hb_000190_090 Hb_025336_020 Hb_025336_020 Hb_012022_080--Hb_025336_020 Hb_021576_010 Hb_021576_010 Hb_012022_080--Hb_021576_010 Hb_000327_250 Hb_000327_250 Hb_012022_080--Hb_000327_250 Hb_011224_160 Hb_011224_160 Hb_012022_080--Hb_011224_160 Hb_008226_070--Hb_012022_080 Hb_012760_040 Hb_012760_040 Hb_008226_070--Hb_012760_040 Hb_003226_120 Hb_003226_120 Hb_008226_070--Hb_003226_120 Hb_008226_070--Hb_000190_090 Hb_008226_070--Hb_001221_020 Hb_000692_160 Hb_000692_160 Hb_003906_170--Hb_000692_160 Hb_005081_020 Hb_005081_020 Hb_003906_170--Hb_005081_020 Hb_083799_010 Hb_083799_010 Hb_003906_170--Hb_083799_010 Hb_003906_170--Hb_000327_250 Hb_075315_010 Hb_075315_010 Hb_003906_170--Hb_075315_010 Hb_000088_270 Hb_000088_270 Hb_001019_050--Hb_000088_270 Hb_001019_050--Hb_025336_020 Hb_000347_450 Hb_000347_450 Hb_001019_050--Hb_000347_450 Hb_001019_050--Hb_107298_010 Hb_005489_140 Hb_005489_140 Hb_001019_050--Hb_005489_140 Hb_004880_150 Hb_004880_150 Hb_001221_020--Hb_004880_150 Hb_000841_050 Hb_000841_050 Hb_001221_020--Hb_000841_050 Hb_000025_190 Hb_000025_190 Hb_001221_020--Hb_000025_190 Hb_005648_010 Hb_005648_010 Hb_001221_020--Hb_005648_010 Hb_003776_060 Hb_003776_060 Hb_001221_020--Hb_003776_060 Hb_001493_150 Hb_001493_150 Hb_001221_020--Hb_001493_150 Hb_004837_280 Hb_004837_280 Hb_107298_010--Hb_004837_280 Hb_107298_010--Hb_005489_140 Hb_001900_100 Hb_001900_100 Hb_107298_010--Hb_001900_100 Hb_003777_290 Hb_003777_290 Hb_107298_010--Hb_003777_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.24652 13.0116 12.5728 24.8735 9.54382 11.3138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3746 13.3845 8.45427 41.6961 17.3403

CAGE analysis