Hb_000841_050

Information

Type -
Description -
Location Contig841: 72706-79408
Sequence    

Annotation

kegg
ID cam:101502421
description carbon catabolite repressor protein 4 homolog 5-like
nr
ID XP_010094762.1
description hypothetical protein L484_019972 [Morus notabilis]
swissprot
ID Q0WKY2
description Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana GN=CCR4-5 PE=2 SV=2
trembl
ID W9QXE1
description Uncharacterized protein OS=Morus notabilis GN=L484_019972 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60145: 72720-79237 , PASA_asmbl_60146: 73536-78223
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000841_050 0.0 - - hypothetical protein L484_019972 [Morus notabilis]
2 Hb_012393_030 0.0725320064 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
3 Hb_002477_290 0.0762846633 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
4 Hb_001221_020 0.0768346827 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
5 Hb_004880_150 0.0791969013 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
6 Hb_000663_060 0.0811221296 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
7 Hb_001269_130 0.0816949876 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
8 Hb_000025_190 0.0839590338 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
9 Hb_000367_090 0.0846187028 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
10 Hb_005648_010 0.0857157059 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
11 Hb_000185_220 0.0860570623 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
12 Hb_000363_190 0.08606641 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
13 Hb_001493_150 0.0892145838 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
14 Hb_005976_080 0.09151311 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
15 Hb_005601_040 0.0916793656 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
16 Hb_001828_180 0.0918614212 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
17 Hb_000109_180 0.0922319876 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
18 Hb_001269_600 0.0926287155 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_001195_400 0.0926930335 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
20 Hb_000227_160 0.0943869093 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]

Gene co-expression network

sample Hb_000841_050 Hb_000841_050 Hb_012393_030 Hb_012393_030 Hb_000841_050--Hb_012393_030 Hb_002477_290 Hb_002477_290 Hb_000841_050--Hb_002477_290 Hb_001221_020 Hb_001221_020 Hb_000841_050--Hb_001221_020 Hb_004880_150 Hb_004880_150 Hb_000841_050--Hb_004880_150 Hb_000663_060 Hb_000663_060 Hb_000841_050--Hb_000663_060 Hb_001269_130 Hb_001269_130 Hb_000841_050--Hb_001269_130 Hb_006059_030 Hb_006059_030 Hb_012393_030--Hb_006059_030 Hb_003159_050 Hb_003159_050 Hb_012393_030--Hb_003159_050 Hb_001195_400 Hb_001195_400 Hb_012393_030--Hb_001195_400 Hb_001493_150 Hb_001493_150 Hb_012393_030--Hb_001493_150 Hb_005601_040 Hb_005601_040 Hb_012393_030--Hb_005601_040 Hb_002477_290--Hb_004880_150 Hb_002660_170 Hb_002660_170 Hb_002477_290--Hb_002660_170 Hb_007218_120 Hb_007218_120 Hb_002477_290--Hb_007218_120 Hb_000251_030 Hb_000251_030 Hb_002477_290--Hb_000251_030 Hb_006059_010 Hb_006059_010 Hb_002477_290--Hb_006059_010 Hb_001221_020--Hb_004880_150 Hb_000025_190 Hb_000025_190 Hb_001221_020--Hb_000025_190 Hb_005648_010 Hb_005648_010 Hb_001221_020--Hb_005648_010 Hb_003776_060 Hb_003776_060 Hb_001221_020--Hb_003776_060 Hb_001221_020--Hb_001493_150 Hb_004880_150--Hb_003776_060 Hb_002811_100 Hb_002811_100 Hb_004880_150--Hb_002811_100 Hb_004880_150--Hb_000025_190 Hb_004880_150--Hb_005648_010 Hb_001828_180 Hb_001828_180 Hb_000663_060--Hb_001828_180 Hb_000778_010 Hb_000778_010 Hb_000663_060--Hb_000778_010 Hb_000663_060--Hb_001269_130 Hb_000363_190 Hb_000363_190 Hb_000663_060--Hb_000363_190 Hb_023001_040 Hb_023001_040 Hb_000663_060--Hb_023001_040 Hb_163175_010 Hb_163175_010 Hb_000663_060--Hb_163175_010 Hb_000080_130 Hb_000080_130 Hb_001269_130--Hb_000080_130 Hb_000364_050 Hb_000364_050 Hb_001269_130--Hb_000364_050 Hb_003098_070 Hb_003098_070 Hb_001269_130--Hb_003098_070 Hb_006824_010 Hb_006824_010 Hb_001269_130--Hb_006824_010 Hb_005946_150 Hb_005946_150 Hb_001269_130--Hb_005946_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.782113 1.53927 2.60902 3.41715 1.06148 2.00779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.95437 2.36569 2.42347 3.89387 2.9079

CAGE analysis