Hb_000363_190

Information

Type -
Description -
Location Contig363: 138279-141738
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37130g
description POPTRDRAFT_175964; hypothetical protein
nr
ID XP_012070953.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
swissprot
ID Q94EH2
description Mitochondrial import inner membrane translocase subunit TIM22-2 OS=Arabidopsis thaliana GN=TIM22-2 PE=1 SV=1
trembl
ID A0A067L595
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00986 PE=4 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial import inner membrane translocase subunit tim22-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37293: 138264-141719 , PASA_asmbl_37294: 138519-138634
cDNA
(Sanger)
(ID:Location)		 029_K05.ab1: 138301-141555

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_190 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
2 Hb_001828_180 0.0568666225 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
3 Hb_000663_060 0.0630809686 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
4 Hb_000409_050 0.0641749674 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
5 Hb_000398_060 0.068477347 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
6 Hb_002232_360 0.0696969276 - - PREDICTED: proline iminopeptidase isoform X2 [Jatropha curcas]
7 Hb_002301_100 0.0699281981 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
8 Hb_003777_290 0.0731140946 - - polypyrimidine tract binding protein, putative [Ricinus communis]
9 Hb_011224_160 0.074306868 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
10 Hb_001269_600 0.0767565097 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_027073_020 0.0778212561 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
12 Hb_007472_070 0.0791591969 - - cir, putative [Ricinus communis]
13 Hb_000167_010 0.079434865 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002439_010 0.0799746497 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
15 Hb_001301_150 0.0805500484 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
16 Hb_029243_030 0.0820835099 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
17 Hb_023001_040 0.0823045973 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
18 Hb_000778_010 0.0834270024 - - hypothetical protein [Bacillus subtilis]
19 Hb_002357_060 0.083483994 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
20 Hb_003883_060 0.0839230519 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_190 Hb_000363_190 Hb_001828_180 Hb_001828_180 Hb_000363_190--Hb_001828_180 Hb_000663_060 Hb_000663_060 Hb_000363_190--Hb_000663_060 Hb_000409_050 Hb_000409_050 Hb_000363_190--Hb_000409_050 Hb_000398_060 Hb_000398_060 Hb_000363_190--Hb_000398_060 Hb_002232_360 Hb_002232_360 Hb_000363_190--Hb_002232_360 Hb_002301_100 Hb_002301_100 Hb_000363_190--Hb_002301_100 Hb_001828_180--Hb_000663_060 Hb_000778_010 Hb_000778_010 Hb_001828_180--Hb_000778_010 Hb_023001_040 Hb_023001_040 Hb_001828_180--Hb_023001_040 Hb_001828_180--Hb_002301_100 Hb_002439_010 Hb_002439_010 Hb_001828_180--Hb_002439_010 Hb_000663_060--Hb_000778_010 Hb_001269_130 Hb_001269_130 Hb_000663_060--Hb_001269_130 Hb_000663_060--Hb_023001_040 Hb_163175_010 Hb_163175_010 Hb_000663_060--Hb_163175_010 Hb_005489_040 Hb_005489_040 Hb_000409_050--Hb_005489_040 Hb_006189_020 Hb_006189_020 Hb_000409_050--Hb_006189_020 Hb_000773_040 Hb_000773_040 Hb_000409_050--Hb_000773_040 Hb_027506_010 Hb_027506_010 Hb_000409_050--Hb_027506_010 Hb_016172_030 Hb_016172_030 Hb_000409_050--Hb_016172_030 Hb_060980_010 Hb_060980_010 Hb_000409_050--Hb_060980_010 Hb_000398_060--Hb_002301_100 Hb_005288_130 Hb_005288_130 Hb_000398_060--Hb_005288_130 Hb_000398_060--Hb_001828_180 Hb_012733_040 Hb_012733_040 Hb_000398_060--Hb_012733_040 Hb_000398_060--Hb_001269_130 Hb_001671_100 Hb_001671_100 Hb_002232_360--Hb_001671_100 Hb_001999_310 Hb_001999_310 Hb_002232_360--Hb_001999_310 Hb_029243_030 Hb_029243_030 Hb_002232_360--Hb_029243_030 Hb_000392_430 Hb_000392_430 Hb_002232_360--Hb_000392_430 Hb_002232_360--Hb_001828_180 Hb_002301_100--Hb_012733_040 Hb_001242_120 Hb_001242_120 Hb_002301_100--Hb_001242_120 Hb_001493_150 Hb_001493_150 Hb_002301_100--Hb_001493_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.63101 16.9067 21.5891 26.6814 13.7875 16.3087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9111 22.505 12.4248 32.9356 26.1397

CAGE analysis