Hb_027506_010

Information

Type -
Description -
Location Contig27506: 8033-17635
Sequence    

Annotation

kegg
ID pop:POPTR_0011s08280g
description hypothetical protein
nr
ID XP_012072113.1
description PREDICTED: cullin-4 [Jatropha curcas]
swissprot
ID Q8LGH4
description Cullin-4 OS=Arabidopsis thaliana GN=CUL4 PE=1 SV=1
trembl
ID A0A067KPB5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04625 PE=3 SV=1
Gene Ontology
ID GO:0005829
description cullin-4-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28820: 8279-17603 , PASA_asmbl_28821: 16854-17525 , PASA_asmbl_28822: 16552-17082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027506_010 0.0 - - PREDICTED: cullin-4 [Jatropha curcas]
2 Hb_060980_010 0.0442334508 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
3 Hb_016172_030 0.0512219878 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
4 Hb_000206_160 0.0524035736 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
5 Hb_003758_010 0.0589880327 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
6 Hb_000409_050 0.0597661427 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
7 Hb_065500_020 0.0642980181 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
8 Hb_000103_290 0.0649190376 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
9 Hb_000979_220 0.0650740487 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
10 Hb_011819_020 0.0660293987 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
11 Hb_033312_040 0.0668502234 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
12 Hb_000676_330 0.0669048854 - - protein with unknown function [Ricinus communis]
13 Hb_002411_110 0.067149656 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
14 Hb_000510_360 0.0687357183 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
15 Hb_001817_170 0.0692889507 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
16 Hb_006189_020 0.0693013462 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
17 Hb_000317_100 0.0693189018 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
18 Hb_002357_070 0.0693343688 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
19 Hb_002890_130 0.0694380006 - - tip120, putative [Ricinus communis]
20 Hb_003528_050 0.0705016766 - - protein transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_027506_010 Hb_027506_010 Hb_060980_010 Hb_060980_010 Hb_027506_010--Hb_060980_010 Hb_016172_030 Hb_016172_030 Hb_027506_010--Hb_016172_030 Hb_000206_160 Hb_000206_160 Hb_027506_010--Hb_000206_160 Hb_003758_010 Hb_003758_010 Hb_027506_010--Hb_003758_010 Hb_000409_050 Hb_000409_050 Hb_027506_010--Hb_000409_050 Hb_065500_020 Hb_065500_020 Hb_027506_010--Hb_065500_020 Hb_060980_010--Hb_016172_030 Hb_019840_030 Hb_019840_030 Hb_060980_010--Hb_019840_030 Hb_060980_010--Hb_065500_020 Hb_060980_010--Hb_000409_050 Hb_000001_170 Hb_000001_170 Hb_060980_010--Hb_000001_170 Hb_021165_010 Hb_021165_010 Hb_016172_030--Hb_021165_010 Hb_004037_020 Hb_004037_020 Hb_016172_030--Hb_004037_020 Hb_016172_030--Hb_065500_020 Hb_024650_080 Hb_024650_080 Hb_016172_030--Hb_024650_080 Hb_000676_330 Hb_000676_330 Hb_000206_160--Hb_000676_330 Hb_000206_160--Hb_003758_010 Hb_005701_050 Hb_005701_050 Hb_000206_160--Hb_005701_050 Hb_000996_020 Hb_000996_020 Hb_000206_160--Hb_000996_020 Hb_000373_170 Hb_000373_170 Hb_000206_160--Hb_000373_170 Hb_001817_170 Hb_001817_170 Hb_003758_010--Hb_001817_170 Hb_000510_360 Hb_000510_360 Hb_003758_010--Hb_000510_360 Hb_033312_040 Hb_033312_040 Hb_003758_010--Hb_033312_040 Hb_006189_020 Hb_006189_020 Hb_003758_010--Hb_006189_020 Hb_005489_040 Hb_005489_040 Hb_000409_050--Hb_005489_040 Hb_000409_050--Hb_006189_020 Hb_000773_040 Hb_000773_040 Hb_000409_050--Hb_000773_040 Hb_000409_050--Hb_016172_030 Hb_002749_060 Hb_002749_060 Hb_065500_020--Hb_002749_060 Hb_011819_020 Hb_011819_020 Hb_065500_020--Hb_011819_020 Hb_065500_020--Hb_021165_010 Hb_008289_040 Hb_008289_040 Hb_065500_020--Hb_008289_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.948 25.5023 24.1673 23.034 18.4003 13.4245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9648 12.7728 13.8796 29.1141 23.7446

CAGE analysis