Hb_000510_360

Information

Type transcription factor
Description TF Family: GNAT
Location Contig510: 323686-338285
Sequence    

Annotation

kegg
ID rcu:RCOM_0991560
description histone acetyltransferase gcn5, putative (EC:2.3.1.48)
nr
ID XP_012092127.1
description PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
swissprot
ID Q9AR19
description Histone acetyltransferase GCN5 OS=Arabidopsis thaliana GN=HAG1 PE=1 SV=1
trembl
ID A0A067JF31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21849 PE=4 SV=1
Gene Ontology
ID GO:0000123
description histone acetyltransferase gcn5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46322: 334406-338212 , PASA_asmbl_46324: 323720-335783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_360 0.0 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
2 Hb_000085_170 0.0504923873 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
3 Hb_033312_040 0.0510091658 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
4 Hb_003758_010 0.0521408219 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
5 Hb_006189_020 0.0542750605 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
6 Hb_000321_140 0.0638056453 - - RNA-binding protein, putative [Ricinus communis]
7 Hb_001817_170 0.0639301342 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
8 Hb_004333_040 0.0644251055 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
9 Hb_001377_190 0.067650761 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
10 Hb_000676_330 0.0678210538 - - protein with unknown function [Ricinus communis]
11 Hb_004109_320 0.0686856848 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
12 Hb_027506_010 0.0687357183 - - PREDICTED: cullin-4 [Jatropha curcas]
13 Hb_007894_150 0.0698193804 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
14 Hb_000868_120 0.0705906911 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
15 Hb_000189_600 0.0718750578 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
16 Hb_002768_050 0.0721093087 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
17 Hb_000476_060 0.0732235211 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
18 Hb_000445_060 0.0733497675 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
19 Hb_001300_010 0.0737685206 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
20 Hb_001226_150 0.0742731018 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000510_360 Hb_000510_360 Hb_000085_170 Hb_000085_170 Hb_000510_360--Hb_000085_170 Hb_033312_040 Hb_033312_040 Hb_000510_360--Hb_033312_040 Hb_003758_010 Hb_003758_010 Hb_000510_360--Hb_003758_010 Hb_006189_020 Hb_006189_020 Hb_000510_360--Hb_006189_020 Hb_000321_140 Hb_000321_140 Hb_000510_360--Hb_000321_140 Hb_001817_170 Hb_001817_170 Hb_000510_360--Hb_001817_170 Hb_000702_090 Hb_000702_090 Hb_000085_170--Hb_000702_090 Hb_000085_170--Hb_000321_140 Hb_012506_030 Hb_012506_030 Hb_000085_170--Hb_012506_030 Hb_000085_170--Hb_033312_040 Hb_002326_110 Hb_002326_110 Hb_000085_170--Hb_002326_110 Hb_033312_040--Hb_006189_020 Hb_001481_060 Hb_001481_060 Hb_033312_040--Hb_001481_060 Hb_000139_080 Hb_000139_080 Hb_033312_040--Hb_000139_080 Hb_004333_040 Hb_004333_040 Hb_033312_040--Hb_004333_040 Hb_003098_070 Hb_003098_070 Hb_033312_040--Hb_003098_070 Hb_003758_010--Hb_001817_170 Hb_027506_010 Hb_027506_010 Hb_003758_010--Hb_027506_010 Hb_003758_010--Hb_033312_040 Hb_000206_160 Hb_000206_160 Hb_003758_010--Hb_000206_160 Hb_003758_010--Hb_006189_020 Hb_000409_050 Hb_000409_050 Hb_006189_020--Hb_000409_050 Hb_006189_020--Hb_004333_040 Hb_006189_020--Hb_001817_170 Hb_006189_020--Hb_000139_080 Hb_002055_020 Hb_002055_020 Hb_000321_140--Hb_002055_020 Hb_001009_280 Hb_001009_280 Hb_000321_140--Hb_001009_280 Hb_000610_040 Hb_000610_040 Hb_000321_140--Hb_000610_040 Hb_000880_070 Hb_000880_070 Hb_000321_140--Hb_000880_070 Hb_002042_050 Hb_002042_050 Hb_001817_170--Hb_002042_050 Hb_003626_070 Hb_003626_070 Hb_001817_170--Hb_003626_070 Hb_002071_070 Hb_002071_070 Hb_001817_170--Hb_002071_070 Hb_001817_170--Hb_000139_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.35494 12.7185 14.7858 10.1811 8.21267 6.77703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.43785 5.92818 7.98532 11.7088 12.1044

CAGE analysis