Hb_000610_040

Information

Type -
Description -
Location Contig610: 36913-39602
Sequence    

Annotation

kegg
ID rcu:RCOM_1598800
description hypothetical protein
nr
ID XP_012073750.1
description PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NTZ0
description JHL20J20.7 protein OS=Jatropha curcas GN=JHL20J20.7 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50977: 37967-39583 , PASA_asmbl_50983: 37181-37495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000610_040 0.0 - - PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
2 Hb_000321_140 0.0633556155 - - RNA-binding protein, putative [Ricinus communis]
3 Hb_003436_020 0.0639004696 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
4 Hb_103747_020 0.0640430087 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
5 Hb_003186_020 0.0680539543 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
6 Hb_007894_160 0.0687656555 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
7 Hb_000702_090 0.0714585071 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
8 Hb_000085_170 0.072577097 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
9 Hb_000563_130 0.0759705082 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
10 Hb_002014_040 0.0762310882 - - site-1 protease, putative [Ricinus communis]
11 Hb_002326_040 0.0763105223 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
12 Hb_011972_020 0.0763607688 - - protein binding protein, putative [Ricinus communis]
13 Hb_000477_050 0.0781517816 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
14 Hb_000317_510 0.0785174084 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
15 Hb_002811_270 0.0787932697 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
16 Hb_000120_280 0.0800216355 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
17 Hb_002055_020 0.0800463262 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
18 Hb_000567_070 0.0805278149 - - autophagy protein, putative [Ricinus communis]
19 Hb_008397_010 0.0807285284 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
20 Hb_003758_010 0.0824742132 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000610_040 Hb_000610_040 Hb_000321_140 Hb_000321_140 Hb_000610_040--Hb_000321_140 Hb_003436_020 Hb_003436_020 Hb_000610_040--Hb_003436_020 Hb_103747_020 Hb_103747_020 Hb_000610_040--Hb_103747_020 Hb_003186_020 Hb_003186_020 Hb_000610_040--Hb_003186_020 Hb_007894_160 Hb_007894_160 Hb_000610_040--Hb_007894_160 Hb_000702_090 Hb_000702_090 Hb_000610_040--Hb_000702_090 Hb_002055_020 Hb_002055_020 Hb_000321_140--Hb_002055_020 Hb_000085_170 Hb_000085_170 Hb_000321_140--Hb_000085_170 Hb_001009_280 Hb_001009_280 Hb_000321_140--Hb_001009_280 Hb_000510_360 Hb_000510_360 Hb_000321_140--Hb_000510_360 Hb_000880_070 Hb_000880_070 Hb_000321_140--Hb_000880_070 Hb_003645_060 Hb_003645_060 Hb_003436_020--Hb_003645_060 Hb_004267_040 Hb_004267_040 Hb_003436_020--Hb_004267_040 Hb_000487_180 Hb_000487_180 Hb_003436_020--Hb_000487_180 Hb_000563_130 Hb_000563_130 Hb_003436_020--Hb_000563_130 Hb_002301_300 Hb_002301_300 Hb_003436_020--Hb_002301_300 Hb_000317_510 Hb_000317_510 Hb_103747_020--Hb_000317_510 Hb_002014_040 Hb_002014_040 Hb_103747_020--Hb_002014_040 Hb_002686_040 Hb_002686_040 Hb_103747_020--Hb_002686_040 Hb_005723_020 Hb_005723_020 Hb_103747_020--Hb_005723_020 Hb_008226_090 Hb_008226_090 Hb_103747_020--Hb_008226_090 Hb_000373_080 Hb_000373_080 Hb_003186_020--Hb_000373_080 Hb_000457_230 Hb_000457_230 Hb_003186_020--Hb_000457_230 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_031284_010 Hb_031284_010 Hb_003186_020--Hb_031284_010 Hb_000214_050 Hb_000214_050 Hb_003186_020--Hb_000214_050 Hb_000115_280 Hb_000115_280 Hb_003186_020--Hb_000115_280 Hb_008397_010 Hb_008397_010 Hb_007894_160--Hb_008397_010 Hb_007894_160--Hb_002686_040 Hb_000243_130 Hb_000243_130 Hb_007894_160--Hb_000243_130 Hb_007894_160--Hb_103747_020 Hb_002475_040 Hb_002475_040 Hb_007894_160--Hb_002475_040 Hb_021165_010 Hb_021165_010 Hb_000702_090--Hb_021165_010 Hb_007248_030 Hb_007248_030 Hb_000702_090--Hb_007248_030 Hb_023313_040 Hb_023313_040 Hb_000702_090--Hb_023313_040 Hb_000702_090--Hb_000085_170 Hb_004586_060 Hb_004586_060 Hb_000702_090--Hb_004586_060 Hb_016172_030 Hb_016172_030 Hb_000702_090--Hb_016172_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.1737 6.28387 9.44954 6.88483 7.50107 5.02884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.81467 3.54253 4.3558 7.87997 7.00706

CAGE analysis